YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|157929012, gi...
Organism: synthetic construct
Length: 375 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157929012, gi....

Description E-value Query
Range
Subject
Range
gi|114685990, gi... - gi|114685998|ref|XP_001150621.1| PREDICTED: phosphatidylserine decarboxylase isoform 10 [Pan troglod...
0.0 [1..375] [1..375]
gi|109093922, gi... - gi|109093922|ref|XP_001111849.1| PREDICTED: phosphatidylserine decarboxylase isoform 4 [Macaca mulat...
0.0 [1..375] [1..375]
PISD_BOVIN - Phosphatidylserine decarboxylase proenzyme, mitochondrial OS=Bos taurus GN=PISD PE=2 SV=1
0.0 [11..375] [52..416]
gi|73995115 - gi|73995115|ref|XP_866442.1| PREDICTED: similar to phosphatidylserine decarboxylase isoform 2 [Canis...
0.0 [9..375] [47..410]
PISD_PONPY - Phosphatidylserine decarboxylase proenzyme - Pongo pygmaeus (Orangutan)
PISD_PONAB - Phosphatidylserine decarboxylase proenzyme, mitochondrial OS=Pongo abelii GN=PISD PE=2 SV=1
0.0 [12..375] [34..409]
gi|109452016, gi... - gi|109452016|emb|CAK54870.1| PISD [synthetic construct], gi|109451420|emb|CAK54571.1| PISD [syntheti...
gi|119580391, gi... - gi|56417784|emb|CAI23032.1| phosphatidylserine decarboxylase [Homo sapiens], gi|56202518|emb|CAI2244...
0.0 [12..375] [34..409]
gi|148725313, gi... - gi|68361510|ref|XP_686038.1| PREDICTED: similar to MGC84353 protein isoform 1 [Danio rerio], gi|1487...
0.0 [12..375] [62..426]

Back

Predicted Domain #1
Region A:
Residues: [1-123]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMCQSEARQG PELRAAKWLH FPQLALRRRL GQLSCMSRPA LKLRSWPLTV LYYLLPFGAL  60
   61 RPLSRVGWRP VSRVALYKSV PTRLLSRAWG RLNQVELPHW LRRPVYSLYI WTFGVNMKEA 120
  121 AVE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [124-375]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLHHYRNLSE FFRRKLKPQA RPVCGLHSVI SPSDGRILNF GQVKNCEVEQ VKGVTYSLES  60
   61 FLGPRMCTED LPFPPAASCD SFKNQLVTRE GNELYHCVIY LAPGDYHCFH SPTDWTVSHR 120
  121 RHFPGSLMSV NPGMARWIKE LFCHNERVVL TGDWKHGFFS LTAVGATNVG SIRIYFDRDL 180
  181 HTNSPRHSKG SYNDFSFVTH TNREGVPMRK GEHLGEFNLG STIVLIFEAP KDFNFQLKTG 240
  241 QKIRFGEALG SL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.11
Match: 2gprA
Description: GLUCOSE PERMEASE IIA FROM MYCOPLASMA CAPRICOLUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.674366586819828 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle