YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123996879, gi...
Organism:	synthetic construct
Length:	251 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123996879, gi....

Description	E-value	Query Range	Subject Range
gi\|109131316 - gi\|109131316\|ref\|XP_001100881.1\| PREDICTED: similar to transcription associated factor 9B [Macaca mu...	411.0	[0..1]	[251..1]
gi\|4689154 - gi\|4689154\|gb\|AAD27786.1\|AF077053_1 neuronal cell death-related protein [Homo sapiens]	411.0	[0..1]	[251..1]
gi\|55729555\|emb\|... - hypothetical protein [Pongo pygmaeus] gi\|55729555 - gi\|55729555\|emb\|CAH91508.1\| hypothetical protein [Pongo abelii]	410.0	[0..1]	[251..1]
gi\|61820839 - gi\|61820839\|ref\|XP_584087.1\| PREDICTED: similar to transcription associated factor 9B isoform 1 [Bos...	397.0	[0..1]	[251..1]
gi\|114689249 - gi\|114689249\|ref\|XP_529052.2\| PREDICTED: transcription associated factor 9B [Pan troglodytes]	394.0	[0..1]	[251..1]
TAF9B_RAT - Transcription initiation factor TFIID subunit 9B OS=Rattus norvegicus GN=Taf9b PE=2 SV=2	376.0	[0..1]	[242..1]
gi\|74007827 - gi\|74007827\|ref\|XP_538086.2\| PREDICTED: similar to TBP-associated factor 9L isoform 1 [Canis familia...	376.0	[0..6]	[243..1]
gi\|50745551 - gi\|50745551\|ref\|XP_420153.1\| PREDICTED: similar to Transcription initiation factor TFIID subunit 9 (...	369.0	[0..1]	[249..136]
gi\|74149284 - gi\|74149284\|dbj\|BAE22420.1\| unnamed protein product [Mus musculus]	364.0	[0..1]	[242..1]

Back

Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESGKMAPPK NAPRDALVMA QILKDMGITE YEPRVINQML EFAFRYVTTI LDDAKIYSSH  60
   61 AKKPNVDADD VRLAIQCRAD QSFTSPPPRD FLLDIARQKN QTPLPLIKPY AGPRLPPDRY 120
  121 CLTAPNYRLK SLIKKGPNQG RLVPRLSV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.09691
Match:	1tafA
Description:	TAF(II)42
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [149-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAVSSKPTTP TIATPQTVSV PNKVATPMSV TSQRFTVQIP PSQSTPVKPV PATTAVQNVL  60
   61 INPSMIGPKN ILITTNMVSS QNTANEANPL KRKHEDDDDN DIM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits