YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114629282
Organism:	Pan troglodytes
Length:	393 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114629282.

Description	E-value	Query Range	Subject Range
KIN17_MOUSE - DNA/RNA-binding protein KIN17 OS=Mus musculus GN=Kin PE=1 SV=1	516.0	[0..1]	[393..1]
gi\|149021017, gi... - ref\|XP_341555.1\| similar to Kin protein [Rattus norvegicus], gi\|157817336\|ref\|NP_001102999.1\| antige...	508.0	[0..1]	[393..1]
gi\|109088173 - gi\|109088173\|ref\|XP_001107965.1\| PREDICTED: similar to HsKin17 protein isoform 2 [Macaca mulatta]	485.0	[0..1]	[393..1]
gi\|50731537 - gi\|50731537\|ref\|XP_417297.1\| PREDICTED: similar to HsKin17 protein; antigenic determinant of recA pr...	483.0	[0..1]	[393..1]
gi\|73949092 - gi\|73949092\|ref\|XP_535194.2\| PREDICTED: similar to HsKin17 protein isoform 1 [Canis familiaris]	480.0	[0..1]	[393..1]
gi\|115453837, gi... - gi\|37700344\|gb\|AAR00634.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|215697417\|db...	471.0	[0..1]	[392..1]
gi\|55242813, gi\|... - gi\|58381988\|ref\|XP_311588.2\| ENSANGP00000023646 [Anopheles gambiae str. PEST], gi\|55242813\|gb\|EAA450...	462.0	[0..2]	[392..1]
gi\|18405389, gi\|... - gi\|4204268\|gb\|AAD10649.1\| Similar to Kin17 protein [Arabidopsis thaliana], pir\|\|H96596 hypothetical ...	457.0	[0..1]	[393..1]
gi\|82524382, gi\|... - gi\|82524382\|ref\|NP_001025257.2\| KIN, antigenic determinant of recA protein homolog [Danio rerio], gi...	454.0	[0..1]	[393..1]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKSDFLTPK AIANRIKSKG LQKLRWYCQM CQKQCRDENG FKCHCMSESH QRQLLLASEN  60
   61 PQQFMDYFSE EFRNDFLELL RRRFGTKRVH NNIVYNEYIS HREHIHMNAT QWETLTDFTK 120
  121 WL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [123-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GREGLCKVDE TPKGWYIQYI DRDPETIRRQ LELEKKKKQD LDDEEKTAKF IEEQVRRGLE  60
   61 GKEQEVPTFT ELSRENDEEK VTFNLSKGAC SSSGATSSKS STLGPSALKT IGSSASVKRK 120
  121 ESSQSSTQSK EKKKKKSALD EIMEIEEEKK RTARTDY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.522879
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [280-393]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WLQPEIIVKI ITKKLGEKYH KKKAIVKEVI DKYTAVVKMI DSGDKLKLDQ THLETVIPAP  60
   61 GKRILVLNGG YRGNEGTLES INEKTFSATI VIETGPLKGR RVEGIQYEDI SKLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.09691
Match:	2ckkA
Description:	No description for 2ckkA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits