YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114599686
Organism:	Pan troglodytes
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114599686.

Description	E-value	Query Range	Subject Range
gi\|62642770, gi\|... - gi\|86129704\|gb\|ABC86561.1\| TGF beta-inducible nuclear protein [Rattus norvegicus], gi\|62642770\|ref\|X... NSA2_MOUSE - Ribosome biogenesis protein NSA2 homolog OS=Mus musculus GN=Nsa2 PE=2 SV=1	478.0	[0..1]	[260..1]
gi\|68534732 - gi\|68534732\|gb\|AAH98657.1\| Cdk105 protein [Rattus norvegicus]	476.0	[0..1]	[260..1]
gi\|73949746 - gi\|73949746\|ref\|XP_850805.1\| PREDICTED: similar to TGF beta-inducible nuclear protein 1 (L-name rela... NSA2_BOVIN - Ribosome biogenesis protein NSA2 homolog OS=Bos taurus GN=NSA2 PE=2 SV=1 gi\|149726539 - gi\|149726539\|ref\|XP_001504729.1\| PREDICTED: similar to TGF beta-inducible nuclear protein 1 [Equus c...	476.0	[0..1]	[260..1]
gi\|134025771, gi... - gi\|89272759\|emb\|CAJ83866.1\| TGF beta-inducible nuclear protein 1 [Xenopus tropicalis], gi\|62859971\|r...	475.0	[0..1]	[260..1]
gi\|109077600, gi... - gi\|109077602\|ref\|XP_001103534.1\| PREDICTED: TGF beta-inducible nuclear protein 1 isoform 2 [Macaca m...	474.0	[0..1]	[260..1]
gi\|49118803 - gi\|49118803\|gb\|AAH73255.1\| Unknown (protein for MGC:80606) [Xenopus laevis]	473.0	[0..1]	[260..1]
gi\|41054639, gi\|... - gi\|41054639\|ref\|NP_955862.1\| TGF beta-inducible nuclear protein 1 [Danio rerio], gi\|28278483\|gb\|AAH4...	470.0	[0..1]	[260..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQNEYIELH RKRYGYRLDY HEKKRKKESR EAHERSKKAK KMIGLKAKLY HKQRHAEKIQ  60
   61 MKKTIKMHEK RNTKQKNDEK TPQGAVPAYL LDREGQSRAK VLSNMIKQKR KEKAGKWEVP 120
  121 LPKVRAQGET EVLKVIRT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [139-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKRKKKAWKR MVTKVCFVGD GFTRKPPKYE RFIRPMGLRF KKAHVTHPEL KATFCLPILG  60
   61 VKKNPSSPLY TTLGVITKGT VIEVNVSELG LVTQGGKVIW GKYAQVTNNP ENDGCINAVL 120
  121 LV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits