YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114640332
Organism:	Pan troglodytes
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114640332.

Description	E-value	Query Range	Subject Range
gi\|73955150 - gi\|73955150\|ref\|XP_854099.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	109.0	[0..1]	[83..166]
gi\|32411199, gi\|... - gi\|32411199\|ref\|XP_326080.1\| hypothetical protein [Neurospora crassa], gi\|28924727\|gb\|EAA33840.1\| hy... gi\|85109764 - gi\|85109764\|ref\|XP_963076.1\| hypothetical protein [Neurospora crassa OR74A]	97.0	[0..1]	[83..615]
TIM8B_MOUSE - Mitochondrial import inner membrane translocase subunit Tim8 B OS=Mus musculus GN=Timm8b PE=1 SV=1 TIM8B_RAT - Mitochondrial import inner membrane translocase subunit Tim8 B OS=Rattus norvegicus GN=Timm8b PE=3 S...	96.0	[0..1]	[83..1]
gi\|109123504 - gi\|109123504\|ref\|XP_001107083.1\| PREDICTED: translocase of inner mitochondrial membrane 8 homolog B ...	95.0	[0..1]	[83..1]
TIM8B_BOVIN - Mitochondrial import inner membrane translocase subunit Tim8 B OS=Bos taurus GN=TIMM8B PE=3 SV=1	95.0	[0..1]	[83..1]
gi\|47226185 - gi\|47226185\|emb\|CAG08332.1\| unnamed protein product [Tetraodon nigroviridis]	94.0	[0..1]	[82..1]
gi\|50766075 - gi\|50766075\|ref\|XP_422986.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 10 ho...	92.0	[0..13]	[80..123]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELGEADEA ELQRLVAAEQ QKAQFTAQVH HFMELCWDKC VEKPGNRLDS RTENCLSSCV  60
   61 DRFIDTTLAI TSRFAQIVQK GGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.69897
Match:	2bskB
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits