YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254827705, gi...
Organism:	Listeria monocytogenes FSL N3-165
Length:	414 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254827705, gi....

Description	E-value	Query Range	Subject Range
SNF3 - Plasma membrane low glucose sensor that regulates glucose transport; contains 12 predicted transmemb... SNF3_YEAST - High-affinity glucose transporter SNF3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=S...	188.0	[0..1]	[414..94]
TRET1_AEDAE - Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1	185.0	[0..3]	[414..336]
gi\|116199481, gi... - gi\|88179175\|gb\|EAQ86643.1\| hypothetical protein CHGG_07896 [Chaetomium globosum CBS 148.51], gi\|1161...	182.0	[0..5]	[414..182]
gi\|169764102 - gi\|169764102\|ref\|XP_001727951.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83770979 - gi\|83770979\|dbj\|BAE61112.1\| unnamed protein product [Aspergillus oryzae]	179.0	[0..11]	[414..210]
gi\|110827356, gi... - gi\|111615223\|ref\|ZP_01402289.1\| Sugar phosphate permease-like [Verminephrobacter eiseniae EF01-2], g...	177.0	[0..16]	[414..304]
gi\|67536615, gi\|... - gi\|67542336\|ref\|ZP_00420273.1\| General substrate transporter:Major facilitator superfamily [Burkhold...	175.0	[0..2]	[414..274]
gi\|49526727 - gi\|49526727\|emb\|CAG60354.1\| unnamed protein product [Candida glabrata] gi\|50289971, gi\|... - gi\|50289971\|ref\|XP_447417.1\| hypothetical protein CAGL0I03872g [Candida glabrata CBS138], gi\|4952672...	170.0	[0..3]	[414..115]
gi\|55238369, gi\|... - gi\|58387445\|ref\|XP_315568.2\| ENSANGP00000022770 [Anopheles gambiae str. PEST], gi\|55238369\|gb\|EAA440...	169.0	[0..3]	[414..200]
gi\|52005333, gi\|... - gi\|52787512\|ref\|YP_093341.1\| YwtG [Bacillus licheniformis ATCC 14580], gi\|52350014\|gb\|AAU42648.1\| Yw...	161.0	[0..15]	[412..10]

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Predicted Domain #1

Region A:
Residues: [1-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYTKEEKSW IFQDWANSAY SIMITTAILP IYFKGVAANA GIADTTSTAY WGYANSIGTL  60
   61 LISLLAPILG TIADYQFFKK RFFGIFTAIG IGFTFLLIFI PTDAWLLLLG FYVLSLIGFS 120
  121 GANIFYDAFL IDVTTNDRMD KVSSAGYAYG YLGSCIPFII FIIFQATGIL PISDVALVNI 180
  181 GFVMTALWWL FFTIPMWKNV HQIHYIPAVK RPVRTSFKRL FHTISHISEH KNIVIFLIAY 240
  241 FFYIDGVDTI FRMATSYGID LGISQTTLIL ILLMTQLVAF PFTLLYGYLA KRFSAKPLIF 300
  301 TAIFVYIIIC IYAVFMKSAL DFWILAMLVG TSQGGIQALS RSFFGKIIPK KRSNEFYGFY 360
  361 NIFGKFSAIM GPALMGVITQ ITGKTQYGVA SLIVLFLVGG ILFVFVKEKN LENL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.30103
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	4.09176719149278	bayes_pls_golite062009
transmembrane transporter activity	3.5865018981083	bayes_pls_golite062009
substrate-specific transporter activity	3.3426261924492	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.29689809004391	bayes_pls_golite062009
ion transmembrane transporter activity	1.94035843948137	bayes_pls_golite062009
active transmembrane transporter activity	1.59419818573076	bayes_pls_golite062009
cation transmembrane transporter activity	1.5181741634556	bayes_pls_golite062009
secondary active transmembrane transporter activity	1.22264637452409	bayes_pls_golite062009
polyol transmembrane transporter activity	0.924836669821548	bayes_pls_golite062009
alcohol transmembrane transporter activity	0.924836669821548	bayes_pls_golite062009
glycerol transmembrane transporter activity	0.812001619402678	bayes_pls_golite062009
binding	0.805286077372817	bayes_pls_golite062009
symporter activity	0.74591237387473	bayes_pls_golite062009
solute:cation symporter activity	0.74591237387473	bayes_pls_golite062009
sugar:hydrogen symporter activity	0.143419068761182	bayes_pls_golite062009
cation:sugar symporter activity	0.143419068761182	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: