YRC Public Data Repository - Protein Structure Prediction

Protein:	ATPG_PSEAB
Organism:	Pseudomonas aeruginosa UCBPP-PA14
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPG_PSEAB.

Description	E-value	Query Range	Subject Range
gi\|148138 - gi\|148138\|gb\|AAA24736.1\| ATP synthase gamma subunit [Escherichia coli]	0.0	[1..286]	[1..287]
ATPG_ECO24 - ATP synthase gamma chain OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=atpG PE=3 SV=1 gi\|170766612, gi... - gi\|170766612\|ref\|ZP_02901065.1\| ATP synthase F1, gamma subunit [Escherichia albertii TW07627], gi\|17... ATPG_ECO55 - ATP synthase gamma chain OS=Escherichia coli (strain 55989 / EAEC) GN=atpG PE=3 SV=1	0.0	[1..286]	[1..287]
gi\|194420428, gi... - gi\|83571335\|ref\|ZP_00922775.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Shigella dysenteriae ... gi\|194435837, gi... - gi\|83588402\|ref\|ZP_00927026.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli 101-... ATPG_SHIB3 - ATP synthase gamma chain OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=atpG PE=3 SV... ATPG_ECOHS - ATP synthase gamma chain OS=Escherichia coli O9:H4 (strain HS) GN=atpG PE=3 SV=1 gi\|75210657, gi\|... - gi\|75210657\|ref\|ZP_00710798.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli B171... gi\|190904116, gi... - gi\|75230994\|ref\|ZP_00717429.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli B7A]... gi\|192957494, gi... - gi\|75236465\|ref\|ZP_00720561.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli E110... gi\|191170529, gi... - gi\|75242479\|ref\|ZP_00726223.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli F11]... ATPG_SHIFL - ATP synthase gamma chain OS=Shigella flexneri GN=atpG PE=3 SV=1 gi\|24054295, gi\|... - gi\|24115036\|ref\|NP_709546.1\| F0F1 ATP synthase subunit gamma [Shigella flexneri 2a str. 301], gi\|240... ATPG_ECOL6 - ATP synthase gamma chain OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=atpG PE=3... gi\|30064962, gi\|... - gi\|30064962\|ref\|NP_839133.1\| F0F1 ATP synthase subunit gamma [Shigella flexneri 2a str. 2457T], gi\|3... ATPG_ECO57 - ATP synthase gamma chain OS=Escherichia coli O157:H7 GN=atpG PE=3 SV=1 EG10104 - F1 sector of membrane-bound ATP synthase, gamma subunit / ATP synthase subunit gamma, membrane-bound... gi\|15804333, gi\|... - gi\|15804333\|ref\|NP_290372.1\| F0F1 ATP synthase subunit gamma [Escherichia coli O157:H7 EDL933], gi\|1... ATPG_ESCF3 - ATP synthase gamma chain OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=... ATPG_ECO8A - ATP synthase gamma chain OS=Escherichia coli O8 (strain IAI1) GN=atpG PE=3 SV=1 ATPG_ECO45 - ATP synthase gamma chain OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=atpG PE=3 SV=1 ATPG_ECO81 - ATP synthase gamma chain OS=Escherichia coli O81 (strain ED1a) GN=atpG PE=3 SV=1 sp\|B7UMJ8\|ATPG_ECO27 - ATP synthase gamma chain OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=atpG PE=3 SV=1 ATPG_ECO7I - ATP synthase gamma chain OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=atpG PE=3 SV=1 ATPG_ECOLU - ATP synthase gamma chain OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=atpG PE=3 SV=1 gi\|195936360 - gi\|195936360\|ref\|ZP_03081742.1\| F0F1 ATP synthase subunit gamma [Escherichia coli O157:H7 str. EC402... gi\|208727153, gi... - gi\|208807352\|ref\|ZP_03249689.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4206... gi\|208812722, gi... - gi\|208812722\|ref\|ZP_03254051.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4045... gi\|208741481, gi... - gi\|208821358\|ref\|ZP_03261678.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4042... ATPG_ECO5E - ATP synthase gamma chain OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=atpG PE=3 SV=1 gi\|254795739, gi... - gi\|254795739\|ref\|YP_003080576.1\| F1 sector of membrane-bound ATP synthase, gamma subunit [Escherichi... ATPG_ECOSE - ATP synthase gamma chain OS=Escherichia coli (strain SE11) GN=atpG PE=3 SV=1 gi\|254163685, gi... - gi\|254163685\|ref\|YP_003046793.1\| F0F1 ATP synthase subunit gamma [Escherichia coli B str. REL606], g... ATPG_ECO27 - ATP synthase gamma chain OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=atpG PE=3 SV=1 gi\|254038952, gi... - gi\|254038952\|ref\|ZP_04873004.1\| ATP synthase F1 [Escherichia sp. 1_1_43], gi\|226838917\|gb\|EEH70944.1... gi\|217322161, gi... - gi\|217325940\|ref\|ZP_03442024.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. TW1458... gi\|253326676, gi... - gi\|254290435\|ref\|YP_003056183.1\| F0F1 ATP synthase subunit gamma [Escherichia coli BL21(DE3)], gi\|25... gi\|251786998, gi... - gi\|251786998\|ref\|YP_003001302.1\| hypothetical protein B21_03561 [Escherichia coli BL21], gi\|24237927... ATPG_ECOBW - ATP synthase gamma chain OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=atpG PE=3 SV=1 gi\|226902798, gi... - gi\|237703534\|ref\|ZP_04534015.1\| membrane-bound ATP synthase F1 sector gamma-subunit [Escherichia sp.... gi\|227839233, gi... - gi\|227883955\|ref\|ZP_04001760.1\| F0F1 ATP synthase subunit gamma [Escherichia coli 83972], gi\|2278392... EG10104 - F1 sector of membrane-bound ATP synthase, gamma subunit / ATP synthase subunit gamma, membrane-bound... ATPG_ECOL6 - ATP synthase gamma chain OS=Escherichia coli O6 GN=atpG PE=3 SV=1 ATPG_ECOLI - ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1 sector gamma subunit) - Escherichia coli gi\|189369484, gi... - gi\|189369484\|gb\|EDU87900.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4501], g... gi\|168766233, gi... - gi\|189364469\|gb\|EDU82888.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4486], g... ATPG_ECOUT - ATP synthase gamma chain OS=Escherichia coli (strain UTI89 / UPEC) GN=atpG PE=3 SV=1 gi\|187771442, gi... - gi\|187771442\|gb\|EDU35286.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4196], g... gi\|15833929, gi\|... - gi\|15833929\|ref\|NP_312702.1\| F0F1 ATP synthase subunit gamma [Escherichia coli O157:H7 str. Sakai], ... gi\|168779968, gi... - gi\|189002320\|gb\|EDU71306.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4076], g... gi\|168786576, gi... - gi\|189373262\|gb\|EDU91678.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC869], gi... gi\|168798781, gi... - gi\|189378702\|gb\|EDU97118.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC508], gi... ATPG_ECODH - ATP synthase gamma chain OS=Escherichia coli (strain K12 / DH10B) GN=atpG PE=3 SV=1 ATPG_ECOSM - ATP synthase gamma chain OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=atpG PE=3 SV=1 ATPG_ECOL5 - ATP synthase gamma chain OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=atpG PE=3 SV=1 ATPG_SHIF8 - ATP synthase gamma chain OS=Shigella flexneri serotype 5b (strain 8401) GN=atpG PE=3 SV=1 ATPG_ECOK1 - ATP synthase gamma chain OS=Escherichia coli O1:K1 / APEC GN=atpG PE=3 SV=1 gi\|124530053, gi... - gi\|124530053\|ref\|ZP_01700836.1\| ATP synthase F1, gamma subunit [Escherichia coli B], gi\|124499458\|gb... gi\|168748537, gi... - gi\|188016989\|gb\|EDU55111.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4113], g... gi\|168753635, gi... - gi\|189359205\|gb\|EDU77624.1\| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4401], g... ATPG_ECOLC - ATP synthase gamma chain OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=atpG PE=3 SV=... gi\|192930532, gi... - gi\|75258272\|ref\|ZP_00729720.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli E22]... gi\|188493986, gi... - gi\|75514201\|ref\|ZP_00736509.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli 5363... ATPG_SHIDS - ATP synthase gamma chain OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=atpG PE=3 SV=1 gi\|85676305, gi\|... - gi\|89110274\|ref\|AP_004054.1\| F1 sector of membrane-bound ATP synthase, gamma subunit [Escherichia co...	0.0	[1..286]	[1..287]
gi\|6625702 - gi\|6625702\|gb\|AAF19361.1\|AF188265_7 ATP synthase subunit gamma [Salmonella typhimurium] gi\|6625702\|gb\|AA... - ATP synthase subunit gamma [Salmonella typhimurium]	0.0	[1..286]	[1..287]
gi\|77961817, gi\|... - gi\|77961817\|ref\|ZP_00825647.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Yersinia mollaretii A...	0.0	[1..286]	[1..287]
ATPG_SHISS - ATP synthase gamma chain OS=Shigella sonnei (strain Ss046) GN=atpG PE=3 SV=1	0.0	[1..286]	[1..287]
ATPG_SHIBS - ATP synthase gamma chain OS=Shigella boydii serotype 4 (strain Sb227) GN=atpG PE=3 SV=1	0.0	[1..286]	[1..287]
gi\|238787863, gi... - gi\|77973801\|ref\|ZP_00829346.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Yersinia frederikseni...	0.0	[1..286]	[1..287]
ATPG_YERPG - ATP synthase gamma chain OS=Yersinia pestis bv. Antiqua (strain Angola) GN=atpG PE=3 SV=1 gi\|238759557, gi... - gi\|238759557\|ref\|ZP_04620719.1\| ATP synthase gamma chain [Yersinia aldovae ATCC 35236], gi\|238702216... ATPG_YERP3 - ATP synthase gamma chain OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=atpG PE=3... gi\|229700231, gi... - gi\|229896793\|ref\|ZP_04511956.1\| F1 sector of membrane-bound ATP synthase, gamma subunit [Yersinia pe... gi\|229841916, gi... - gi\|229841916\|ref\|ZP_04462072.1\| F1 sector of membrane-bound ATP synthase, gamma subunit [Yersinia pe... gi\|229839832, gi... - gi\|229839832\|ref\|ZP_04459991.1\| F1 sector of membrane-bound ATP synthase, gamma subunit [Yersinia pe... gi\|22128004, gi\|... - gi\|22128004\|ref\|NP_671427.1\| F0F1 ATP synthase subunit gamma [Yersinia pestis KIM], gi\|21961152\|gb\|A... ATPG_YERPE - ATP synthase gamma chain OS=Yersinia pestis GN=atpG PE=3 SV=1 gi\|238727474, gi... - gi\|77977935\|ref\|ZP_00833372.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Yersinia intermedia A... gi\|167049038, gi... - gi\|167401656\|ref\|ZP_02307150.1\| ATP synthase F1, gamma subunit [Yersinia pestis biovar Antiqua str. ... gi\|166958219, gi... - gi\|167422827\|ref\|ZP_02314580.1\| ATP synthase F1, gamma subunit [Yersinia pestis biovar Orientalis st... gi\|167055524, gi... - gi\|167425510\|ref\|ZP_02317263.1\| ATP synthase F1, gamma subunit [Yersinia pestis biovar Mediaevalis s... ATPG_YERPY - ATP synthase gamma chain OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=atpG PE=3 SV=... ATPG_YERPB - ATP synthase gamma chain OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=atpG PE=3 SV=1 gi\|165921957, gi... - gi\|165926097\|ref\|ZP_02221929.1\| ATP synthase F1, gamma subunit [Yersinia pestis biovar Orientalis st... gi\|165991565, gi... - gi\|166009643\|ref\|ZP_02230541.1\| ATP synthase F1, gamma subunit [Yersinia pestis biovar Antiqua str. ... gi\|166205549, gi... - gi\|166213251\|ref\|ZP_02239286.1\| ATP synthase F1, gamma subunit [Yersinia pestis biovar Antiqua str. ... ATPG_YERPN - ATP synthase gamma chain OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=atpG PE=3 SV=1 gi\|150260944, gi... - gi\|150260944\|ref\|ZP_01917672.1\| ATP synthase gamma subunit protein [Yersinia pestis CA88-4125], gi\|1... ATPG_YERPP - ATP synthase gamma chain OS=Yersinia pestis (strain Pestoides F) GN=atpG PE=3 SV=1 gi\|165939971, gi... - gi\|89104509\|ref\|ZP_01177050.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Yersinia pestis biova... ATPG_YERPA - ATP synthase gamma chain OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=atpG PE=3 SV=1 ATPG_YERPS - ATP synthase gamma chain OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=atpG PE=3 SV=... gi\|45443752, gi\|... - gi\|45443752\|ref\|NP_995291.1\| F0F1 ATP synthase subunit gamma [Yersinia pestis biovar Microtus str. 9... gi\|218931098, gi... - gi\|218931098\|ref\|YP_002348973.1\| F0F1 ATP synthase subunit gamma [Yersinia pestis CO92], gi\|16124230... ATPG_YERPS - ATP synthase gamma chain OS=Yersinia pseudotuberculosis GN=atpG PE=3 SV=1	0.0	[1..286]	[1..287]
ATPG_SHESA - ATP synthase gamma chain OS=Shewanella sp. (strain ANA-3) GN=atpG PE=3 SV=1	0.0	[1..286]	[1..286]

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Predicted Domain #1

Region A:
Residues: [1-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAKEIRSK IASIKSTQKI TNAMEKVAVS KMRKAQMRMA AGRPYAERIR QVIGHLANAN  60
   61 PEYRHPFMVE REVKRVGYIV VSSDRGLCGG LNINLFKSLV KDMSGYREQG AEIDLCVIGS 120
  121 KGASFFRSFG GNVVAAISHL GEEPSINDLI GSVKVMLDAY LEGRIDRLFV VSNKFVNTMT 180
  181 QKPTVEQLIP LVADDDQELK HHWDYLYEPD AKSLLDGLLV RYVESQVYQA VVENNACEQA 240
  241 ARMIAMKNAT DNAGELISDL QLIYNKARQA AITQEISEIV GGAAAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.0
Match:	1fs0G
Description:	ATP synthase (F1-ATPase), gamma subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits