YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123979828, gi...
Organism:	synthetic construct
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123979828, gi....

Description	E-value	Query Range	Subject Range
gi\|114650768 - gi\|114650768\|ref\|XP_001146058.1\| PREDICTED: ATPase, H+/K+ exchanging, beta polypeptide [Pan troglody...	0.0	[1..291]	[1..291]
ATP4B_RABIT - Potassium-transporting ATPase subunit beta OS=Oryctolagus cuniculus GN=ATP4B PE=2 SV=1	0.0	[1..291]	[1..291]
gi\|109121354 - gi\|109121354\|ref\|XP_001088163.1\| PREDICTED: ATPase, H+/K+ exchanging, beta polypeptide [Macaca mulat...	0.0	[1..291]	[1..291]
gi\|22094878 - gi\|22094878\|gb\|AAM92016.1\| Na/K-ATPase beta 2 subunit [synthetic construct]	0.0	[1..291]	[1..289]
AT1B2_OCHCU - Sodium/potassium-transporting ATPase subunit beta-2 OS=Ochotona curzoniae GN=ATP1B2 PE=2 SV=1 CCDS32550.1_1 - null	0.0	[1..291]	[1..289]
ATP1B2 - ATPase, Na+/K+ transporting, beta 2 polypeptide gi\|114666229 - gi\|114666229\|ref\|XP_001171996.1\| PREDICTED: Na+/K+ -ATPase beta 2 subunit isoform 2 [Pan troglodytes...	0.0	[1..291]	[1..289]
gi\|73955592 - gi\|73955592\|ref\|XP_546597.2\| PREDICTED: similar to Na+/K+ -ATPase beta 2 subunit [Canis familiaris]	0.0	[1..291]	[1..289]
AT1B2_MOUSE - Sodium/potassium-transporting ATPase subunit beta-2 OS=Mus musculus GN=Atp1b2 PE=1 SV=2	0.0	[1..291]	[1..289]

Back

Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALQEKKTC GQRMEEFQRY CWNPDTGQML GRTLSRWVWI SLYYVAFYVV MTGLFALCLY  60
   61 VLMQTV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [67-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPYTPDYQDQ LRSPGVTLRP DVYGEKGLEI VYNVSDNRTW ADLTQTLHAF LAGYS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [122-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAAQEDSINC TSEQYFFQES FRAPNHTKFS CKFTADMLQN CSGLADPNFG FEEGKPCFII  60
   61 KMNRIVKFLP SNGSAPRVDC AFLDQPRELG QPLQVKYYPP NGTFSLHYFP YYGKKAQPHY 120
  121 SNPLVAAKLL NIPRNAEVAI VCKVMAEHVT FNNPHDPYEG KVEFKLKIEK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits