YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123999939, gi...
Organism:	synthetic construct
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123999939, gi....

Description	E-value	Query Range	Subject Range
gi\|50736119 - gi\|50736119\|ref\|XP_419052.1\| PREDICTED: similar to HSPC177 [Gallus gallus]	6.0E-50	[1..219]	[93..311]
gi\|74001062 - gi\|74001062\|ref\|XP_544799.2\| PREDICTED: similar to chromatin modifying protein 2B [Canis familiaris]	2.0E-44	[1..218]	[581..789]
gi\|4680707 - gi\|4680707\|gb\|AAD27743.1\|AF132968_1 CGI-34 protein [Homo sapiens]	1.0E-41	[1..219]	[1..218]
CHMP5_MOUSE - Charged multivesicular body protein 5 OS=Mus musculus GN=Chmp5 PE=1 SV=1 CHMP5_RAT - Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5 PE=2 SV=1	5.0E-41	[1..219]	[1..219]
gi\|74267886, gi\|... - gi\|77736309\|ref\|NP_001029854.1\| chromatin modifying protein 5 [Bos taurus], gi\|74267886\|gb\|AAI03183....	6.0E-39	[1..219]	[1..219]
CG6259-PA, FBpp0... - This gene is referred to in FlyBase by the symbol Dmel\CG6259 (CG6259, FBgn0036740). It is a protein... gi\|220948198, gi... - gi\|220957426\|gb\|ACL91256.1\| CG6259-PA [synthetic construct], gi\|220948198\|gb\|ACL86642.1\| CG6259-PA [...	1.0E-36	[1..219]	[1..222]
CHMP5_DANRE - Charged multivesicular body protein 5 OS=Danio rerio GN=chmp5 PE=2 SV=1	1.0E-36	[1..219]	[1..220]
CHMP5_XENLA - Charged multivesicular body protein 5 OS=Xenopus laevis GN=chmp5 PE=2 SV=1	4.0E-36	[1..219]	[1..219]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRLFGKAKP KAPPPSLTDC IGTVDSRAES IDKKISRLDA ELVKYKDQIK KMREGPAKNM  60
   61 VKQKALRVLK QKRMYEQQRD NLAQQSFNME QANYTIQSLK DTKTTVDAMK LGVKEMKKAY 120
  121 KQVKIDQIED LQDQLEDMME DANEIQEALS RSYGTPELDE DDLEAELDAL GDELLADEDS 180
  181 SYLDEAASAP AIPEGVPTDT KNKDGVLVDE FGLPQIPAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.045757
Match:	2gd5A
Description:	No description for 2gd5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits