YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114603388, gi...
Organism:	Pan troglodytes
Length:	367 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114603388, gi....

Description	E-value	Query Range	Subject Range
gi\|109079769 - gi\|109079769\|ref\|XP_001096004.1\| PREDICTED: dual specificity phosphatase 1 [Macaca mulatta]	4.0E-72	[1..367]	[1..367]
gi\|73953410 - gi\|73953410\|ref\|XP_546235.2\| PREDICTED: similar to Dual specificity protein phosphatase 1 (MAP kinas...	4.0E-72	[1..367]	[1..367]
DUS1_RAT - Dual specificity protein phosphatase 1 OS=Rattus norvegicus GN=Dusp1 PE=1 SV=1	8.0E-72	[1..367]	[1..367]
gi\|60654361 - gi\|60654361\|gb\|AAX29871.1\| dual specificity phosphatase 1 [synthetic construct]	8.0E-72	[1..367]	[1..367]
gi\|409977 - gi\|409977\|gb\|AAB27882.1\| nontransmembrane protein tyrosine phosphatase; ERP [Mus sp.] DUS1_MOUSE - Dual specificity protein phosphatase 1 OS=Mus musculus GN=Dusp1 PE=1 SV=1	2.0E-71	[1..367]	[1..367]
gi\|86821461, gi\|... - gi\|86821461\|gb\|AAI05385.1\| Dual specificity phosphatase 1 [Bos taurus], gi\|114050891\|ref\|NP_00103991...	2.0E-71	[1..367]	[1..367]
gi\|1336816 - gi\|1336816\|gb\|AAB36123.1\| 3CH134/CL100 PTPase [Rattus sp.]	4.0E-71	[1..367]	[1..367]
gi\|30851156, gi\|... - gi\|68396999\|ref\|XP_707628.1\| PREDICTED: similar to Dual specificity protein phosphatase 4 (Mitogen-a...	6.0E-66	[1..367]	[2..367]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMEVGTLDA GGLRALLGER AAQCLLLDCR SFFAFNAGHI AGSVNVRFST IVRRRAKGAM  60
   61 GLEHIVPNAE LRGRLLAGAY HAVVLLDERS AALDGAKRDG TLALAAGALC REARAAQVFF 120
  121 LKGGYEAFSA SCPELCSKQS TPMGLSLPLS TSVPDSAESG CSSCSTPLY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.522879
Match:	1hzmA
Description:	Erk2 binding domain of Mapk phosphatase mkp-3
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [170-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQGGPVEILP FLYLGSAYHA SRKDMLDALG ITALINVSAN CPNHFEGHYQ YKSIPVEDNH  60
   61 KADISSWFNE AIDFIDSIKN AGGRVFVHCQ AGISRSATIC LAYLMRTNRV KLDEAFEFVK 120
  121 QRRSIISPNF SFMGQLLQFE SQVLAPHCSA EAGSPAMAVL DRGTSTTTVF NFPVSIPVHS 180
  181 TNSALSYLQS PITTSPSC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	1m3gA
Description:	Mapk phosphatase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits