YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114559330, gi...
Organism:	Pan troglodytes
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114559330, gi....

Description	E-value	Query Range	Subject Range
gi\|109016095, gi... - gi\|109016095\|ref\|XP_001102928.1\| PREDICTED: similar to GPP34-related protein isoform 3 [Macaca mulat... CCDS966.1_1 - null gi\|90078452 - gi\|90078452\|dbj\|BAE88906.1\| unnamed protein product [Macaca fascicularis]	432.0	[0..1]	[285..1]
gi\|57098795 - gi\|57098795\|ref\|XP_533047.1\| PREDICTED: similar to golgi phosphoprotein 3-like [Canis familiaris]	423.0	[0..1]	[285..1]
GLP3L_BOVIN - Golgi phosphoprotein 3-like OS=Bos taurus GN=GOLPH3L PE=2 SV=1	422.0	[0..1]	[285..1]
GLP3L_RAT - Golgi phosphoprotein 3-like OS=Rattus norvegicus GN=Golph3l PE=2 SV=1	419.0	[0..12]	[285..12]
GLP3L_MOUSE - Golgi phosphoprotein 3-like OS=Mus musculus GN=Golph3l PE=1 SV=1	418.0	[0..12]	[285..12]
gi\|220944844, gi... - gi\|220954760\|gb\|ACL89923.1\| l(2)s5379-PA [synthetic construct], gi\|220944844\|gb\|ACL84965.1\| l(2)s537... l(2)s5379-PA, l(... - The gene lethal (2) s5379 is referred to in FlyBase by the symbol Dmel\l(2)s5379 (CG7085, FBgn001070...	407.0	[0..10]	[284..19]
GOLPH3 - golgi phosphoprotein 3 (coat-protein) gi\|55624518 - gi\|55624518\|ref\|XP_517830.1\| PREDICTED: golgi phosphoprotein 3 isoform 2 [Pan troglodytes]	400.0	[0..1]	[284..1]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLTHRARR TEISKNSEKK MESEEDSNWE KSPDNEDSGD SKDIRLTLME EVLLLGLKDK  60
   61 EGYTSFWNDC ISSGLRGGIL IELAMRGRIY LEPPTMRKKR LLDRKVLLKS DSPTGDVLLD 120
  121 ETLKHIKATE PTETVQTWIE LLTGETWNPF KLQYQLRNVR ERIAKNLVEK GILTTEKQNF 180
  181 LLFDMTTHPV TNTTEKQRLV KKLQDSVLER W

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [212-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNDPQRMDKR TLALLVLAHS SDVLENVFSS LTDDKYDVAM NRAKDLVELD PEVEGTKPSA  60
   61 TEMIWAVLAA FNKS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits