| Protein: | gi|123993797, gi... |
| Organism: | synthetic construct |
| Length: | 341 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123993797, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..341] | [1..341] |
|
|
0.0 | [1..341] | [1..364] |
|
|
0.0 | [1..341] | [1..341] |
|
|
0.0 | [1..341] | [5..346] |
|
|
0.0 | [1..341] | [1..341] |
|
|
2.0E-94 | [1..341] | [1..344] |
|
Region A: Residues: [1-238] |
1 11 21 31 41 51
| | | | | |
1 MPKRKVTFQG VGDEEDEDEI IVPKKKLVDP VAGSGGPGSR FKGKHSLDSD EEEDDDDGGS 60
61 SKYDILASED VEGQEAATLP SEGGVRITPF NLQEEMEEGH FDADGNYFLN RDAQIRDSWL 120
121 DNIDWVKIRE RPPGQRQASD SEEEDSLGQT SMSAQALLEG LLELLLPRET VAGALRRLGA 180
181 RGGGKGRKGP GQPSSPQRLD RLSGLADQMV ARGNLGVYQE TRERLAMRLK GLGCQTLG
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [239-341] |
1 11 21 31 41 51
| | | | | |
1 PHNPTPPPSL DMFAEELAEE ELETPTPTQR GEAESRGDGL VDVMWEYKWE NTGDAELYGP 60
61 FTSAQMQTWV SEGYFPDGVY CRKLDPPGGQ FYNSKRIDFD LYT
|
| Detection Method: | |
| Confidence: | 29.69897 |
| Match: | 1syxB |
| Description: | The crystal structure of a binary U5 snRNP complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.26688015347446 | bayes_pls_golite062009 |
| protein binding | 0.874974846355882 | bayes_pls_golite062009 |
