YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114681956
Organism:	Pan troglodytes
Length:	326 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114681956.

Description	E-value	Query Range	Subject Range
gi\|73992404 - gi\|73992404\|ref\|XP_542990.2\| PREDICTED: similar to Protein C20orf77 homolog [Canis familiaris]	3.0E-64	[1..326]	[152..477]
gi\|109016413 - gi\|109016413\|ref\|XP_001105791.1\| PREDICTED: similar to CG15160-PA [Macaca mulatta]	1.0E-59	[9..321]	[170..478]
RPRD2_MOUSE - Regulation of nuclear pre-mRNA domain-containing protein 2 OS=Mus musculus GN=Rprd2 PE=1 SV=1	1.0E-58	[9..321]	[27..353]
gi\|20521059 - gi\|20521059\|dbj\|BAA32305.2\| KIAA0460 protein [Homo sapiens]	2.0E-58	[9..321]	[18..326]
gi\|109506377 - gi\|109506377\|ref\|XP_214609.4\| PREDICTED: similar to cDNA sequence BC021395 [Rattus norvegicus]	3.0E-58	[1..326]	[128..439]

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Predicted Domain #1

Region A:
Residues: [1-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFSESALE KKLSELSNSQ QSVQTLSLWL IHHRKHAGPI VSVWHRELRK AKSNRKLTFL  60
   61 YLANDVIQNS KRKGPEFTRE FESVLVDAFS HVAREADEGC KKPLERLLNI WQERSVYGGE 120
  121 FIQQLKLSME DSKSPPPKAT EEKKSLKRTF QQIQEEEDDD YPGSYSPQDP SAGPLLTEEL 180
  181 IKALQDLENA ASGDATVRQK IASLPQEVQD VSLLEKITDK EAAERLSKTV DEACLLLAEY 240
  241 NGRLAAELED RRQLARMLVE YTQNQKDVLS EKEKKLEEYK QKLARVTQVR KELKSHIQSL 300
  301 PDLSLLPNVT GGLAPLPSAG DLFSTD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits