YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123995913, gi...
Organism:	synthetic construct
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123995913, gi....

Description	E-value	Query Range	Subject Range
COPT1_PONPY - High affinity copper uptake protein 1 - Pongo pygmaeus (Orangutan) COPT1_PONAB - High affinity copper uptake protein 1 OS=Pongo abelii GN=SLC31A1 PE=2 SV=1	2.0E-50	[1..190]	[1..190]
gi\|109110536 - gi\|109110536\|ref\|XP_001103110.1\| PREDICTED: solute carrier family 31 (copper transporters), member 1...	3.0E-50	[1..190]	[1..190]
gi\|62897291 - gi\|62897291\|dbj\|BAD96586.1\| solute carrier family 31 (copper transporters), member 1 variant [Homo s...	6.0E-50	[1..190]	[1..190]
gi\|45387849, gi\|... - gi\|45501115\|gb\|AAH67161.1\| Solute carrier family 31 (copper transporters), member 1 [Danio rerio], g...	1.0E-48	[1..190]	[1..188]
gi\|57094253 - gi\|57094253\|ref\|XP_538800.1\| PREDICTED: similar to High-affinity copper uptake protein 1 (hCTR1) (Co...	9.0E-48	[2..190]	[57..244]
gi\|47575788, gi\|... - gi\|89273850\|emb\|CAJ83621.1\| solute carrier family 31 (copper transporters), member 1 [Xenopus tropic...	3.0E-47	[1..190]	[1..183]
COPT1_PIG - High affinity copper uptake protein 1 OS=Sus scrofa GN=SLC31A1 PE=2 SV=1	4.0E-46	[1..190]	[1..189]
gi\|28201980, gi\|... - gi\|28201980\|ref\|NP_780299.1\| solute carrier family 31, member 1 [Mus musculus], gi\|26338440\|dbj\|BAC3...	9.0E-46	[12..190]	[20..196]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHSHHMGMS YMDSNSTMQP SHHHPTTSAS HSHGGGDSSM MMMPMTFYFG FKNVELLFSG  60
   61 LVINTAGEMA GAFVAVFLLA MFYEGLKIAR ESLLRKSQVS IRYNSMPVPG PNGTILMETH 120
  121 KTVGQQMLSF PHLLQTVLHI IQVVISYFLM LIFMTYNGYL CIAVAAGAGT GYFLFSWKKA 180
  181 VVVDITEHCH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	59.958607
Match:	PF04145.6
Description:	No description for PF04145.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits