YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157928420, gi...
Organism:	synthetic construct
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157928420, gi....

Description	E-value	Query Range	Subject Range
SYUA_SAGLB - Alpha-synuclein OS=Saguinus labiatus GN=SNCA PE=3 SV=1	168.0	[0..1]	[140..1]
gi\|30584369, gi\|... - gi\|60654049\|gb\|AAX29717.1\| synuclein alpha [synthetic construct], gi\|60654047\|gb\|AAX29716.1\| synucle...	165.0	[0..1]	[140..1]
SYUA_MACFA - Alpha-synuclein OS=Macaca fascicularis GN=SNCA PE=3 SV=1 SYUA_MACMU - Alpha-synuclein OS=Macaca mulatta GN=SNCA PE=3 SV=1	164.0	[0..1]	[140..1]
SYUA_ERYPA - Alpha-synuclein OS=Erythrocebus patas GN=SNCA PE=3 SV=1 CCDS3634.1_1 - null	163.0	[0..1]	[140..1]
gi\|1230575 - gi\|1230575\|gb\|AAC02114.1\| NACP/alpha-synuclein [Homo sapiens]	162.0	[0..1]	[140..1]
SYUA_ATEGE - Alpha-synuclein OS=Ateles geoffroyi GN=SNCA PE=3 SV=1 SYUA_LAGLA - Alpha-synuclein OS=Lagothrix lagotricha GN=SNCA PE=3 SV=1	162.0	[0..1]	[140..1]
gi\|241079 - gi\|241079\|gb\|AAB20688.1\| synuclein SYN1 [Rattus sp.] SYUA_RAT - Alpha-synuclein OS=Rattus norvegicus GN=Snca PE=1 SV=1	161.0	[0..1]	[140..1]
SYUA_PONAB - Alpha-synuclein OS=Pongo abelii GN=SNCA PE=3 SV=1	161.0	[0..1]	[140..1]
SYUA_PIG - Alpha-synuclein OS=Sus scrofa GN=SNCA PE=2 SV=1	160.0	[0..1]	[140..1]
SYUA_MOUSE - Alpha-synuclein OS=Mus musculus GN=Snca PE=1 SV=2	160.0	[0..1]	[140..1]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVFMKGLSK AKEGVVAAAE KTKQGVAEAA GKTKEGVLYV GSKTKEGVVH GVATVAEKTK  60
   61 EQVTNVGGAV VTGVTAVAQK TVEGAGSIAA ATGFVKKDQL GKNEEGAPQE GILEDMPVDP 120
  121 DNEAYEMPSE EGYQDYEPEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.69897
Match:	1xq8A
Description:	Human micelle-bound alpha-synuclein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits