YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123979876, gi...
Organism:	synthetic construct
Length:	349 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123979876, gi....

Description	E-value	Query Range	Subject Range
gi\|73979366 - gi\|73979366\|ref\|XP_539997.2\| PREDICTED: similar to histone mRNA 3 end-specific exonuclease [Canis fa...	2.0E-71	[1..349]	[1..349]
gi\|114623463 - gi\|114623463\|ref\|XP_001136735.1\| PREDICTED: histone mRNA 3' end-specific exonuclease isoform 1 [Pan ...	2.0E-70	[1..349]	[1..349]
ERI1_RAT - 3'-5' exoribonuclease 1 OS=Rattus norvegicus GN=Eri1 PE=2 SV=1	7.0E-70	[1..349]	[1..345]
gi\|74228094, gi\|... - gi\|74228094\|dbj\|BAE38007.1\| unnamed protein product [Mus musculus], gi\|26380424\|dbj\|BAB29333.2\| unna...	8.0E-69	[1..349]	[1..345]
gi\|81673840, gi\|... - gi\|84000359\|ref\|NP_001033281.1\| three prime histone mRNA exonuclease 1 [Bos taurus], gi\|81673840\|gb\|...	1.0E-67	[1..349]	[1..349]
gi\|152976184, gi... - gi\|89203212\|ref\|ZP_01181903.1\| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit...	3.0E-63	[15..349]	[310..621]
DPO3_BACSU - DNA polymerase III polC-type OS=Bacillus subtilis GN=polC PE=1 SV=2 gi\|221318783 - gi\|221318783\|ref\|ZP_03600077.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. JH64... gi\|221313860 - gi\|221313860\|ref\|ZP_03595665.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. NCIB... gi\|221323055 - gi\|221323055\|ref\|ZP_03604349.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. SMY] DPO3_BACSU - DNA polymerase III PolC-type OS=Bacillus subtilis (strain 168) GN=polC PE=1 SV=2	1.0E-62	[15..349]	[313..625]
DPO3_OCEIH - DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 /... DPO3_OCEIH - DNA polymerase III polC-type OS=Oceanobacillus iheyensis GN=polC PE=3 SV=1	3.0E-61	[14..349]	[305..617]

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Predicted Domain #1

Region A:
Residues: [1-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDPQSKEPA GEAVALALLE SPRPEGGEEP PRPSPEETQQ CKFDGQETKG SKFITSSASD  60
   61 FSDPVYKEIA ITNGCINRMS KEELRAKLSE FKLETRGVKD VLKKRLKNYY KKQKLMLKES 120
  121 NFADSYYDYI CIIDFEATCE EGNPPEFVHE IIEFPVVLLN THTLEIEDTF QQYVRPEINT 180
  181 QLSDFCISLT GITQDQVDRA DTFPQVLKKV IDWMKLKELG TKYKYSLLTD GSWDMSKFLN 240
  241 IQCQLSRLKY PPFAKKWINI RKSYGNFYKV PRSQTKLTIM LEKLGMDYDG RPHCGLDDSK 300
  301 NIARIAVRML QDGCELRINE KMHAGQLMSV SSSLPIEGTP PPQMPHFRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.39794
Match:	1zbuA
Description:	No description for 1zbuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits