YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114602176
Organism:	Pan troglodytes
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114602176.

Description	E-value	Query Range	Subject Range
gi\|109506458, gi... - gi\|109507163\|ref\|XP_001064260.1\| PREDICTED: similar to zinc finger, matrin type 2 [Rattus norvegicus...	257.0	[0..1]	[199..118]
gi\|50370210, gi\|... - gi\|52346154\|ref\|NP_001005119.1\| zinc finger, matrin type 2 [Xenopus (Silurana) tropicalis], gi\|50370...	227.0	[0..1]	[199..1]
gi\|55715630, gi\|... - gi\|55715630\|gb\|AAH86293.1\| Zmat2-prov protein [Xenopus laevis], gi\|148231065\|ref\|NP_001088651.1\| zin...	226.0	[0..1]	[199..1]
gi\|47086675, gi\|... - gi\|47086675\|ref\|NP_997846.1\| zinc finger, matrin type 2 [Danio rerio], gi\|37595334\|gb\|AAQ94553.1\| z2...	225.0	[0..1]	[199..1]
gi\|39969771, gi\|... - gi\|39969771\|ref\|XP_366276.1\| hypothetical protein MG10495.4 [Magnaporthe grisea 70-15], gb\|EAA46801....	223.0	[0..2]	[197..7]
gi\|71895465, gi\|... - gi\|71895465\|ref\|NP_001026636.1\| zinc finger, matrin type 2 [Gallus gallus], gi\|53136119\|emb\|CAG32487...	220.0	[0..1]	[199..1]
gi\|115803248, gi... - gi\|115803248\|ref\|XP_785671.2\| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratu...	211.0	[0..11]	[197..400]
CE00458 - WBGene00022794 status:Partially_confirmed SW:P34670 protein_id:AAA28220.1	204.0	[0..3]	[197..197]
gi\|14517383, gi\|... - gi\|18397358\|ref\|NP_566257.1\| nucleic acid binding / zinc ion binding [Arabidopsis thaliana], gi\|1545...	196.0	[0..1]	[198..1]

Back

Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGSGTKNL DFRRKWDKDE YEKLAEKRLT EEREKKDGKP VQPVKRELLR HRDYKVDLES  60
   61 KLGKTIVITK TTPQSEMGGY YCNVCDCVVK DSINFLDHIN GKKHQRNLGM SMRVERSTLD 120
  121 QVKKRFEVNK KKMEEKQKDY DFEERMKELR EEEEKAKAYK KEKQKEKKRR AEEDLTFEED 180
  181 DEMAAVMGFS GFGSTKKSY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.6
Match:	1zr9A
Description:	Solution Structure of a Human C2H2-type Zinc Finger Protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.304205134456748	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: