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View Structure Prediction Details

Protein: gi|123982458, gi...
Organism: synthetic construct
Length: 99 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123982458, gi....

Description E-value Query
Range
Subject
Range
APOC3_MACFA - Apolipoprotein C-III OS=Macaca fascicularis GN=APOC3 PE=1 SV=2
3.0E-34 [1..99] [1..99]
gi|12842337, gi|... - gi|15421856|ref|NP_075603.1| apolipoprotein C-III [Mus musculus], gi|12842337|dbj|BAB25563.1| unname...
5.0E-34 [1..99] [1..99]
gi|109108764 - gi|109108764|ref|XP_001090312.1| PREDICTED: similar to Apolipoprotein C-III precursor (Apo-CIII) (Ap...
9.0E-34 [1..99] [1..99]
gi|91990, gi|149... - gi|91990|pir||B24700 apolipoprotein C-III precursor - rat, gi|149041554|gb|EDL95395.1| apolipoprotei...
3.0E-32 [1..95] [1..95]
APOC3_PIG - Apolipoprotein C-III OS=Sus scrofa GN=APOC3 PE=1 SV=2
gi|423202 - pir||B46018 apolipoprotein C-III - pig
7.0E-32 [1..96] [1..96]
gi|224917, gi|18... - gi|224917|prf||1204193A lipoprotein CIII, gi|186972736|pdb|2JQ3|A Chain A, Structure And Dynamics Of...
6.0E-31 [21..99] [1..79]
APOC3_CANLF - Apolipoprotein C-III OS=Canis lupus familiaris GN=APOC3 PE=2 SV=1
1.0E-30 [1..99] [1..99]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPRVLLVVA LLALLASARA SEAEDASLLS FMQGYMKHAT KTAKDALSSV QESQVAQQAR  60
   61 GWVTDGFSSL KDYWSTVKDK FSEFWDLDPE VRPTSAVAA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 71.619789
Match: PF05778.3
Description: No description for PF05778.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.831 N/A N/A a.112.1 Description not found.


YRC Informatics Platform - Version 3.0
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