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View Structure Prediction Details

Protein: gi|208966202, gi...
Organism: synthetic construct
Length: 547 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208966202, gi....

Description E-value Query
Range		 Subject
Range
ELP3_CHICK - Elongator complex protein 3 OS=Gallus gallus GN=ELP3 PE=2 SV=1
 0.0 [1..547] [1..546]
gi|109085993 - gi|109085993|ref|XP_001110226.1| PREDICTED: similar to elongation protein 3 homolog isoform 2 [Macac...
 0.0 [1..547] [1..547]
gi|114619479 - gi|114619479|ref|XP_001165532.1| PREDICTED: elongation protein 3 homolog isoform 5 [Pan troglodytes]
 0.0 [1..547] [1..547]
gi|10434125 - gi|10434125|dbj|BAB14138.1| unnamed protein product [Homo sapiens]
 0.0 [1..547] [1..547]
gi|73993905 - gi|73993905|ref|XP_534563.2| PREDICTED: similar to elongation protein 3 homolog [Canis familiaris]
 0.0 [1..547] [51..597]
ELP3_DANRE - Elongator complex protein 3 OS=Danio rerio GN=elp3 PE=2 SV=3
 0.0 [2..546] [3..547]
ELP3_MOUSE - Elongator complex protein 3 OS=Mus musculus GN=Elp3 PE=1 SV=1
 0.0 [1..547] [1..547]
ELP3_XENLA - Elongator complex protein 3 OS=Xenopus laevis GN=elp3 PE=2 SV=1
 0.0 [1..546] [1..548]
gi|86821861 - gi|86821861|gb|AAI05501.1| LOC784720 protein [Bos taurus]
 0.0 [1..547] [30..576]

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Predicted Domain #1
Region A:
Residues: [1-547] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQKRKGDLS PAELMMLTIG DVIKQLIEAH EQGKDIDLNK VKTKTAAKYG LSAQPRLVDI  60
   61 IAAVPPQYRK VLMPKLKAKP IRTASGIAVV AVMCKPHRCP HISFTGNICV YCPGGPDSDF 120
  121 EYSTQSYTGY EPTSMRAIRA RYDPFLQTRH RIEQLKQLGH SVDKVEFIVM GGTFMALPEE 180
  181 YRDYFIRNLH DALSGHTSNN IYEAVKYSER SLTKCIGITI ETRPDYCMKR HLSDMLTYGC 240
  241 TRLEIGVQSV YEDVARDTNR GHTVKAVCES FHLAKDSGFK VVAHMMPDLP NVGLERDIEQ 300
  301 FTEFFENPAF RPDGLKLYPT LVIRGTGLYE LWKSGRYKSY SPSDLVELVA RILALVPPWT 360
  361 RVYRVQRDIP MPLVSSGVEH GNLRELALAR MKDLGIQCRD VRTREVGIQE IHHKVRPYQV 420
  421 ELVRRDYVAN GGWETFLSYE DPDQDILIGL LRLRKCSEET FRFELGGGVS IVRELHVYGS 480
  481 VVPVSSRDPT KFQHQGFGML LMEEAERIAR EEHGSGKIAV ISGVGTRNYY RKIGYRLQGP 540
  541 YMVKMLK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.39794
Match: 1oltA
Description: Coproporphyrinogen III oxidase (HemN) from Escherichia coli is a Radical SAM enzyme.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.62614606868017 bayes_pls_golite062009
catalytic activity 1.48331922124015 bayes_pls_golite062009
transferase activity 1.38870107531698 bayes_pls_golite062009
protein binding 0.374124957429525 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle