YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123983879, gi...
Organism:	synthetic construct
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123983879, gi....

Description	E-value	Query Range	Subject Range
gi\|57110218 - gi\|57110218\|ref\|XP_535885.1\| PREDICTED: similar to transmembrane protein 14C [Canis familiaris]	6.0E-26	[2..112]	[3..113]
TM14C_PONAB - Transmembrane protein 14C OS=Pongo abelii GN=TMEM14C PE=3 SV=1 gi\|55731390 - gi\|55731390\|emb\|CAH92409.1\| hypothetical protein [Pongo abelii]	1.0E-25	[1..112]	[1..112]
gi\|62898656 - gi\|62898656\|dbj\|BAD97182.1\| transmembrane protein 14C variant [Homo sapiens]	2.0E-25	[1..112]	[1..112]
gi\|50744874 - gi\|50744874\|ref\|XP_419915.1\| PREDICTED: similar to RIKEN cDNA 5730496E24 [Gallus gallus]	2.0E-25	[8..99]	[198..289]
TM14C_MOUSE - Transmembrane protein 14C OS=Mus musculus GN=Tmem14c PE=1 SV=1	3.0E-25	[2..112]	[3..113]
gi\|109069605, gi... - gi\|109069605\|ref\|XP_001087822.1\| PREDICTED: transmembrane protein 14C isoform 2 [Macaca mulatta], gi...	3.0E-25	[1..112]	[1..112]
TM14C_RAT - Transmembrane protein 14C OS=Rattus norvegicus GN=Tmem14c PE=3 SV=1	4.0E-23	[2..101]	[3..102]
FAX2_ARATH - Protein FATTY ACID EXPORT 2, chloroplastic OS=Arabidopsis thaliana GN=FAX2 PE=2 SV=1	1.0E-22	[2..112]	[129..240]
TM14C_BOVIN - Transmembrane protein 14C OS=Bos taurus GN=TMEM14C PE=1 SV=1	2.0E-22	[2..112]	[3..113]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDTGSVVPL HWFGFGYAAL VASGGIIGYV KAGSVPSLAA GLLFGSLAGL GAYQLSQDPR  60
   61 NVWVFLATSG TLAGIMGMRF YHSGKFMPAG LIAGASLLMV AKVGVSMFNR PH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.69897
Match:	PF03647.4
Description:	No description for PF03647.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits