YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114653201
Organism:	Pan troglodytes
Length:	708 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114653201.

Description	E-value	Query Range	Subject Range
gi\|109083739 - gi\|109083739\|ref\|XP_001090127.1\| PREDICTED: SEC10 protein [Macaca mulatta]	0.0	[1..708]	[1..708]
gi\|26996551 - gi\|26996551\|gb\|AAH41126.1\| Exocyst complex component 5 [Homo sapiens]	0.0	[1..708]	[1..708]
gi\|73963962 - gi\|73963962\|ref\|XP_547832.2\| PREDICTED: similar to Exocyst complex component Sec10 (hSec10) [Canis f...	0.0	[1..708]	[1..708]
gi\|76627941 - gi\|76627941\|ref\|XP_610411.2\| PREDICTED: exocyst complex component 5 [Bos taurus]	0.0	[1..708]	[1..708]
EXOC5_RAT - Exocyst complex component 5 OS=Rattus norvegicus GN=Exoc5 PE=1 SV=1	0.0	[1..708]	[1..708]
EXOC5_MOUSE - Exocyst complex component 5 OS=Mus musculus GN=Exoc5 PE=1 SV=2	0.0	[1..708]	[1..708]
gi\|60098843, gi\|... - gi\|60302826\|ref\|NP_001012607.1\| SEC10 protein [Gallus gallus], gi\|60098843\|emb\|CAH65252.1\| hypotheti...	0.0	[1..708]	[1..707]
gi\|89273956, gi\|... - gi\|89273956\|emb\|CAJ82030.1\| SEC10-like 1 (S. cerevisiae) [Xenopus tropicalis], gi\|62860174\|ref\|NP_00...	0.0	[1..708]	[1..708]

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Predicted Domain #1

Region A:
Residues: [1-327]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTAELFEE PFVADEYIER LVWRTPGGGS RGGPEAFDPK RLLEEFVNHI QELQIMDERI  60
   61 QRKVEKLEQQ CQKEAKEFAK KVQELQKSNQ VAFQHFQELD EHISYVATKV CHLGDQLEGV 120
  121 NTPRQRAVEA QKLMKYFNEF LDGELKSDVF TNSEKIKEAA DIIQKLHLIA QELPFDRFSE 180
  181 VKSKIASKYH DLECQLIQEF TSAQRRGEIS RMREVAAVLL HFKGYSHCVD VYIKQCQEGA 240
  241 YLRNDIFEDA GILCQRVNKQ VGDIFSNPET VLAKLIQNVF EIKLQSFVKE QLEECRKSDA 300
  301 EQYLKNLYDL YTRTTNLSSK LMEFNLG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.16
Match:	1hciA
Description:	alpha-actinin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
SNARE binding	0.309596137075689	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [328-708]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDKQTFLSKL IKSIFISYLE NYIEVETGYL KSRSAMILQR YYDSKNHQKR SIGTGGIQDL  60
   61 KERIRQRTNL PLGPSIDTHG ETFLSQEVVV NLLQETKQAF ERCHRLSDPS DLPRNAFRIF 120
  121 TILVEFLCIE HIDYALETGL AGIPSSDSRN ANLYFLDVVQ QANTIFHLFD KQFNDHLMPL 180
  181 ISSSPKLSEC LQKKKEIIEQ MEMKLDTGID RTLNCMIGQM KHILAAEQKK TDFKPEDENN 240
  241 VLIQYTNACV KVCAYVRKQV EKIKNSMDGK NVDTVLMELG VRFHRLIYEH LQQYSYSCMG 300
  301 GMLAICDVAE YRKCAKDFKI PMVLHLFDTL HALCNLLVVA PDNLKQVCSG EQLANLDKNI 360
  361 LHSFVQLRAD YRSARLARHF S

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.16
Match:	2fji1
Description:	No description for 2fji1 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: