YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168277956, gi...
Organism:	synthetic construct
Length:	724 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168277956, gi....

Description	E-value	Query Range	Subject Range
gi\|114607584 - gi\|114607584\|ref\|XP_001137889.1\| PREDICTED: similar to heat shock protein 90 [Pan troglodytes]	0.0	[1..724]	[303..1026]
gi\|61656603, gi\|... - gi\|63029937\|ref\|NP_001017963.1\| heat shock protein 90kDa alpha (cytosolic), class A member 1 isoform...	0.0	[1..724]	[123..854]
HS90B_CHICK - Heat shock cognate protein HSP 90-beta OS=Gallus gallus GN=HSP90AB1 PE=2 SV=1	0.0	[1..724]	[1..725]
gi\|74147335 - gi\|74147335\|dbj\|BAE27553.1\| unnamed protein product [Mus musculus]	0.0	[1..724]	[1..733]
gi\|71895891, gi\|... - gi\|71895891\|ref\|NP_001025655.1\| heat shock protein 90kDa alpha (cytosolic), class B member 1 [Xenopu...	0.0	[1..724]	[1..723]
gi\|54873686, gi\|... - gi\|54873686\|gb\|AAV41061.1\| Hsp90beta [Xenopus laevis], gi\|50603918\|gb\|AAH77195.1\| Hsp90beta protein ...	0.0	[1..724]	[1..722]

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Predicted Domain #1

Region A:
Residues: [1-724]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEEVHHGEE EVETFAFQAE IAQLMSLIIN TFYSNKEIFL RELISNASDA LDKIRYESLT  60
   61 DPSKLDSGKE LKIDIIPNPQ ERTLTLVDTG IGMTKADLIN NLGTIAKSGT KAFMEALQAG 120
  121 ADISMIGQFG VGFYSAYLVA EKVVVITKHN DDEQYAWESS AGGSFTVRAD HGEPIGRGTK 180
  181 VILHLKEDQT EYLEERRVKE VVKKHSQFIG YPITLYLEKE REKEISDDEA EEEKGEKEEE 240
  241 DKDDEEKPKI EDVGSDEEDD SGKDKKKKTK KIKEKYIDQE ELNKTKPIWT RNPDDITQEE 300
  301 YGEFYKSLTN DWEDHLAVKH FSVEGQLEFR ALLFIPRRAP FDLFENKKKK NNIKLYVRRV 360
  361 FIMDSCDELI PEYLNFIRGV VDSEDLPLNI SREMLQQSKI LKVIRKNIVK KCLELFSELA 420
  421 EDKENYKKFY EAFSKNLKLG IHEDSTNRRR LSELLRYHTS QSGDEMTSLS EYVSRMKETQ 480
  481 KSIYYITGES KEQVANSAFV ERVRKRGFEV VYMTEPIDEY CVQQLKEFDG KSLVSVTKEG 540
  541 LELPEDEEEK KKMEESKAKF ENLCKLMKEI LDKKVEKVTI SNRLVSSPCC IVTSTYGWTA 600
  601 NMERIMKAQA LRDNSTMGYM MAKKHLEINP DHPIVETLRQ KAEADKNDKA VKDLVVLLFE 660
  661 TALLSSGFSL EDPQTHSNRI YRMIKLGLGI DEDEVAAEEP NAAVPDEIPP LEGDEDASRM 720
  721 EEVD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2cg9A
Description:	No description for 2cg9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits