YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|125525319
Organism:	Oryza sativa Indica Group
Length:	307 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125525319.

Description	E-value	Query Range	Subject Range
gi\|222631352, gi... - gi\|54287494\|gb\|AAV31238.1\| putative 26S proteasome non-ATPase regulatory subunit 14 [Oryza sativa Ja...	326.0	[0..1]	[307..1]
gi\|2505940, gi\|1... - gi\|2505940\|emb\|CAA73514.1\| 26S proteasome, non-ATPase subunit [Mus musculus], gi\|10946952\|ref\|NP_067...	326.0	[0..1]	[307..1]
gi\|195576684, gi... - gi\|195576684\|ref\|XP_002078205.1\| GD22663 [Drosophila simulans], gi\|194190214\|gb\|EDX03790.1\| GD22663 ... gi\|195472773, gi... - gi\|195472773\|ref\|XP_002088673.1\| Rpn11 [Drosophila yakuba], gi\|194174774\|gb\|EDW88385.1\| Rpn11 [Droso... gi\|220957124, gi... - gi\|220957124\|gb\|ACL91105.1\| Rpn11-PA [synthetic construct], gi\|220947746\|gb\|ACL86416.1\| Rpn11-PA [sy... gi\|195342656, gi... - gi\|195342656\|ref\|XP_002037916.1\| GM18036 [Drosophila sechellia], gi\|194132766\|gb\|EDW54334.1\| GM18036... gi\|190660634, gi... - gi\|194856517\|ref\|XP_001968767.1\| GG24318 [Drosophila erecta], gi\|190660634\|gb\|EDV57826.1\| GG24318 [D... Rpn11-PA - The gene Rpn11 is referred to in FlyBase by the symbol Dmel\Rpn11 (CG18174, FBgn0028694). It is a pr...	325.0	[0..1]	[307..1]
gi\|125984402, gi... - gi\|54644283\|gb\|EAL33024.1\| GA14824 [Drosophila pseudoobscura pseudoobscura], gi\|125984402\|ref\|XP_001... gi\|54644283\|gb\|E... - GA14824-PA [Drosophila pseudoobscura], GA14824 [Drosophila pseudoobscura pseudoobscura]	325.0	[0..1]	[307..1]
gi\|109468228 - gi\|109468228\|ref\|XP_001059730.1\| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit ...	323.0	[0..16]	[307..97]
gi\|94469152, gi\|... - gi\|94469152\|gb\|ABF18425.1\| 26S proteasome regulatory complex subunit RPN11 [Aedes aegypti], gi\|1571...	321.0	[0..1]	[307..1]
gi\|87248555, gi\|... - gi\|87248555\|gb\|ABD36330.1\| 26S proteasome non-ATPase regulatory subunit 14 [Bombyx mori], gi\|1140526...	320.0	[0..1]	[307..1]
gi\|92870181 - gi\|92870181\|gb\|ABE79516.1\| Mov34-1; Flagellar motor switch protein FliG-like [Medicago truncatula]	319.0	[0..1]	[307..1]
gi\|91088291 - gi\|91088291\|ref\|XP_966426.1\| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 14 i...	318.0	[0..1]	[307..1]
gi\|66552230 - gi\|66552230\|ref\|XP_393559.2\| PREDICTED: similar to Rpn11 CG18174-PA isoform 1 [Apis mellifera]	316.0	[0..1]	[307..1]

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Predicted Domain #1

Region A:
Residues: [1-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERLQRIFGA SGMGQPPTDS PLLDSSEQVY ISSLALLKML KHGRAGVPME VMGLMLGEFV  60
   61 DDYTVRVVDV FAMPQSGTGV SVEAVDHVFQ TNMLDMLKQT GRPEMVVGWY HSHPGFGCWL 120
  121 SGVDINTQQS FEALNPRAVA VVIDPIQSVK GKVVIDAFRL INPQTMMLGQ EPRQTTSNVG 180
  181 HLNKPSIQAL IHGLNRHYYS IAINYRKNEL EEKMLLNLHK K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.221849
Match:	2o95A
Description:	No description for 2o95A was found.

Predicted Domain #2

Region A:
Residues: [222-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KWTDGLILKS FDTHSKTNEQ TVQEMLNLAI KYNKAVQEED ELPPEKLAIA NVGRQDAKKH  60
   61 LEEHVSNLMS SNIVQTLGTM LDTVVF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.800	f.17.1	F1F0 ATP synthase subunit C
View	Download	0.733	a.7.8	GAT domain
View	Download	0.697	a.47.2	t-snare proteins
View	Download	0.579	a.2.1	GreA transcript cleavage protein, N-terminal domain
View	Download	0.574	a.2.7	tRNA-binding arm
View	Download	0.574	a.2.7	tRNA-binding arm
View	Download	0.516	a.30.2	Homodimeric domain of signal transducing histidine kinase
View	Download	0.478	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.441	a.2.11	Fe,Mn superoxide dismutase (SOD), N-terminal domain
View	Download	0.440	a.2.11	Fe,Mn superoxide dismutase (SOD), N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits