YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|116048895, gi...
Organism:	Pseudomonas aeruginosa UCBPP-PA14
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|116048895, gi....

Description	E-value	Query Range	Subject Range
gi\|49076264 - gi\|49076264\|gb\|AAT49541.1\| PA0970 [synthetic construct]	3.0E-42	[1..146]	[1..146]
gi\|68346384, gi\|... - gi\|70732085\|ref\|YP_261841.1\| biopolymer transport protein TolR [Pseudomonas fluorescens Pf-5], gi\|68...	7.0E-39	[1..146]	[1..150]
gi\|95112056, gi\|... - gi\|95112056\|emb\|CAK16783.1\| biopolymer transport protein TolR [Pseudomonas entomophila L48], gi\|1047... gi\|95112056 - gi\|95112056\|emb\|CAK16783.1\| biopolymer transport protein TolR [Pseudomonas entomophila L48]	1.0E-38	[1..146]	[1..150]
gi\|26987955, gi\|... - gi\|26987955\|ref\|NP_743380.1\| biopolymer transport protein TolR [Pseudomonas putida KT2440], gi\|24982... tr\|E4R8N9\|E4R8N9... - TolR OS=Pseudomonas putida (strain BIRD-1) GN=tolR PE=3 SV=1 gi\|5514777 - gi\|5514777\|emb\|CAB50779.1\| TolR protein [Pseudomonas putida] gi\|148510550, gi... - gi\|82740025\|ref\|ZP_00902795.1\| biopolymer transport protein TolR [Pseudomonas putida F1], gi\|8271289... tr\|I7B8K9\|I7B8K9... - Biopolymer transport protein TolR OS=Pseudomonas putida (strain DOT-T1E) GN=tolR PE=3 SV=1	3.0E-38	[1..146]	[1..150]
gi\|213926187, gi... - gi\|213969189\|ref\|ZP_03397328.1\| tolR protein [Pseudomonas syringae pv. tomato T1], gi\|213926187\|gb\|E... gi\|28871119, gi\|... - gi\|28871119\|ref\|NP_793738.1\| tolR protein [Pseudomonas syringae pv. tomato str. DC3000], gi\|28854369... gi\|237800222 - gi\|237800222\|ref\|ZP_04588683.1\| tolR protein [Pseudomonas syringae pv. oryzae str. 1_6] tr\|Q87Y38\|Q87Y38... - TolR protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=tolR-2 PE=3 SV=1 tr\|F3G1F1\|F3G1F1... - TolR protein OS=Pseudomonas syringae pv. pisi str. 1704B GN=PSYPI_00035 PE=3 SV=1 gi\|71555341, gi\|... - gi\|71734788\|ref\|YP_275909.1\| tolR protein [Pseudomonas syringae pv. phaseolicola 1448A], gi\|71555341... gi\|63255368, gi\|... - gi\|66044661\|ref\|YP_234502.1\| biopolymer transport protein ExbD/TolR [Pseudomonas syringae pv. syring...	6.0E-38	[4..146]	[8..154]
gi\|77384628, gi\|... - gi\|77460625\|ref\|YP_350132.1\| biopolymer transport protein ExbD/TolR [Pseudomonas fluorescens Pf0-1],...	2.0E-37	[3..146]	[6..153]
gi\|84316460 - gi\|84316460\|ref\|ZP_00964934.1\| COG0848: Biopolymer transport protein [Pseudomonas aeruginosa C3719] gi\|84322556 - gi\|84322556\|ref\|ZP_00970641.1\| COG0848: Biopolymer transport protein [Pseudomonas aeruginosa 2192] gi\|94417931 - gi\|94417931\|ref\|ZP_01297747.1\| hypothetical protein PaerP_01000079 [Pseudomonas aeruginosa PA7] gi\|32040977 - gi\|32040977\|ref\|ZP_00138560.1\| COG0848: Biopolymer transport protein [Pseudomonas aeruginosa UCBPP-P... gi\|107100426 - gi\|107100426\|ref\|ZP_01364344.1\| hypothetical protein PaerPA_01001451 [Pseudomonas aeruginosa PACS2]	7.0E-37	[14..146]	[1..133]
gi\|71556772, gi\|... - gi\|71736219\|ref\|YP_275168.1\| tolR protein [Pseudomonas syringae pv. phaseolicola 1448A], gi\|71556772...	7.0E-36	[3..146]	[4..147]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARVRHKRKP VAEMNVVPYI DVMLVLLVIF MVTAPMLNQG VKVDLPKVSS EALPQDNNKQ  60
   61 VLTLSVKADG SYYWNVGSEV DTEKQTDSAV SLEQMTDAVT KIMSARPDTQ VFIRGDKAVN 120
  121 YGAVVGAMGA LQQAGVPNVG LITEAP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.455932
Match:	PF02472.7
Description:	No description for PF02472.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.844	N/A	N/A	d.79.1	YjgF-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits