YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114680883
Organism:	Pan troglodytes
Length:	370 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114680883.

Description	E-value	Query Range	Subject Range
gi\|34859262, gi\|... - gi\|34859262\|ref\|XP_230613.2\| PREDICTED: similar to Hydroxyacid oxidase 1 (HAOX1) (Glycolate oxidase)...	3.0E-86	[1..370]	[1..370]
GLO5_ARATH - Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Arabidopsis thaliana GN=GLO5 PE=1 SV=1	7.0E-85	[4..370]	[2..364]
HAOX1_MOUSE - Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=1 SV=1	1.0E-84	[1..370]	[1..370]
gi\|76661283 - gi\|76661283\|ref\|XP_613535.2\| PREDICTED: similar to hydroxyacid oxidase 1 [Bos taurus]	3.0E-84	[1..370]	[1..370]
gi\|109092849 - gi\|109092849\|ref\|XP_001116000.1\| PREDICTED: similar to hydroxyacid oxidase 1 [Macaca mulatta]	3.0E-84	[1..370]	[1..370]
gi\|5689233 - gi\|5689233\|dbj\|BAA82872.1\| unnamed protein product [Homo sapiens]	1.0E-83	[1..370]	[1..370]
gi\|73991331 - gi\|73991331\|ref\|XP_542897.2\| PREDICTED: similar to Hydroxyacid oxidase 1 (HAOX1) (Glycolate oxidase)...	1.0E-83	[1..370]	[1..370]
gi\|54043095 - gi\|54043095\|gb\|AAV28535.1\| glycolate oxidase [Brassica napus]	1.0E-80	[4..370]	[2..367]
gi\|228403 - gi\|228403\|prf\|\|1803516A glycolate oxidase	3.0E-80	[4..366]	[2..360]

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Predicted Domain #1

Region A:
Residues: [1-370]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPRLICIND YEQHAKSVLP KSIYDYYRSG ANDEETLADN IAAFSRWKLY PRMLRNVAET  60
   61 DLSTSVLGQR VSMPICVGAT AMQRMAHVDG ELATVRACQS LGTGMMLSSW ATSSIEEVAE 120
  121 AGPEALRWLQ LYIYKDREVT KKLVRQAEKM GYKAIFVTVD TPYLGNRLDD VRNRFKLPPQ 180
  181 LRMKNFETST LSFSPEENFG DDSGLAAYVA KAIDPSISWE DIKWLRRLTS LPIVAKGILR 240
  241 GDDAREAVKH GLNGILVSNH GARQLDGVPA TIDVLPEIVE AVEGKVEVFL DGGVRKGTDV 300
  301 LKALALGAKA VFVGRPIVWG LAFQGEKGVQ DVLEILKEEF RLAMALSGCQ NVKVIDKTLV 360
  361 RKNPLAVSKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.30103
Match:	2nzlA
Description:	No description for 2nzlA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits