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View Structure Prediction Details

Protein: gi|125556956
Organism: Oryza sativa Indica Group
Length: 518 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125556956.

Description E-value Query
Range
Subject
Range
gi|49527412 - gi|49527412|emb|CAG61052.1| unnamed protein product [Candida glabrata]
gi|50291337, gi|... - gi|50291337|ref|XP_448101.1| unnamed protein product [Candida glabrata], gi|49527412|emb|CAG61052.1|...
348.0 [0..1] [517..97]

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Predicted Domain #1
Region A:
Residues: [1-518]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGAVVSTG AGKDYPGKLT LFVFFTCVVA ATGGLIFGYD IGISGGVTSM DPFLRKFFPE  60
   61 VYRKKQMADK NNQYCKYDNQ LLQTFTSSLY LAALVSSFFA ATVTRVLGRK WSMFAGGLTF 120
  121 LIGAALNGAA ENVAMLIVGR ILLGVGVGFA NQSVPVYLSE MAPARLRGML NIGFQLMITI 180
  181 GILAAELINY GTAKIKAGWG WRVSLALAAV PAAIITLGSL FLPDTPNSLI DRGHPEAAER 240
  241 MLRRIRGSDV DVSEEYADLV AASEESKLVQ HPWRNILRRK YRAQLTMAIC IPFFQQLTGI 300
  301 NVIMFYAPVL FDTLGFKSDA SLMSAVITGL VNVFATLVSI FTVDRLGRRK LFLQGGAQMV 360
  361 VCQVVVGTLI AVKFGTSGIG DIPKGYAAVV VLFICMYVAG FAWSWGPLGW LVPSEIFPLE 420
  421 IRPAGQSINV SVNMLFTFVI AQAFLTMLCH MKFGLFYFFA GWVVIMTVFI ALFLPETKNV 480
  481 PIEEMVLVWK SHWFWRRFIG DHDVHVGANH VSNNKLQP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.0
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle