YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123995965
Organism:	synthetic construct
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123995965.

Description	E-value	Query Range	Subject Range
gi\|114599933 - gi\|114599933\|ref\|XP_001145587.1\| PREDICTED: similar to kinetochore protein CENP-H [Pan troglodytes]	1.0E-98	[1..247]	[60..306]
CENPH_CHICK - Centromere protein H OS=Gallus gallus GN=CENPH PE=1 SV=1	6.0E-85	[23..246]	[10..231]
gi\|149059208, gi... - gi\|149059208\|gb\|EDM10215.1\| rCG44590, isoform CRA_a [Rattus norvegicus], gi\|109465999\|ref\|XP_0010712...	4.0E-84	[4..247]	[2..239]
CENPH_MOUSE - Centromere protein H OS=Mus musculus GN=Cenph PE=1 SV=1	4.0E-82	[1..247]	[1..241]
gi\|109077475 - gi\|109077475\|ref\|XP_001091765.1\| PREDICTED: similar to centromere protein H isoform 2 [Macaca mulatt...	1.0E-79	[1..247]	[1..247]
CENPH_BOVIN - Centromere protein H OS=Bos taurus GN=CENPH PE=2 SV=1	1.0E-74	[1..247]	[1..244]
gi\|73950121 - gi\|73950121\|ref\|XP_852630.1\| PREDICTED: similar to centromere protein H [Canis familiaris]	4.0E-71	[18..226]	[104..312]

Back

Predicted Domain #1

Region A:
Residues: [1-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEQPQMQDA DEPADSGGEG RAGGPPQVAG AQAACSEDRM TLLLRLRAQT KQQLLEYKSM  60
   61 VDASEEKTPE QIMQEKQIEA KIEDLENEIE EVKVAFEIKK LALDRMRLST ALKKNLEKIS 120
  121 RQSSVLMDNM KHLLELNKLI MKSQQESWDL EEKLLDIRKK RLQLKQASES KLLEIQTEKN 180
  181 KQKIDLDSME NSERIKIIRQ NLQMEIKITT VIQHVFQNLI LGSKVNWAED PALKEIVLQL 240
  241 EKNVDMM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.12
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits