YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|120601255, gi...
Organism:	Desulfovibrio vulgaris DP4
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|120601255, gi....

Description	E-value	Query Range	Subject Range
gi\|1020403 - gi\|1020403\|dbj\|BAA11174.1\| desulfoferrodoxin [Desulfovibrio vulgaris] DFX_DESVM - Desulfoferrodoxin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=dfx PE=3 SV=2	203.0	[0..1]	[124..1]
gi\|93451530, gi\|... - gi\|94268618\|ref\|ZP_01291234.1\| Desulfoferrodoxin [delta proteobacterium MLMS-1], gi\|94264843\|ref\|ZP_...	203.0	[0..1]	[124..1]
DFX_DESDE, DESR_... - Desulfoferrodoxin OS=Desulfovibrio desulfuricans GN=dfx PE=1 SV=2, (P22076) Desulfoferrodoxin (EC 1....	203.0	[0..2]	[125..1]
DFX_DESBR, DESR_... - Desulfoferrodoxin OS=Desulfoarculus baarsii GN=dfx PE=1 SV=3, (Q46495) Desulfoferrodoxin (EC 1.15.-.... DFX_DESBR - Desulfoferrodoxin OS=Desulfarculus baarsii GN=dfx PE=1 SV=3 DFX_DESB2 - Desulfoferrodoxin OS=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) GN=df...	201.0	[0..1]	[125..1]
gi\|67980851, gi\|... - gi\|95929752\|ref\|ZP_01312493.1\| desulfoferrodoxin [Desulfuromonas acetoxidans DSM 684], gi\|95134048\|g...	199.0	[0..1]	[126..1]
DFX_DESAG - Desulfoferrodoxin OS=Desulfovibrio alaskensis (strain G20) GN=dfx PE=3 SV=1	196.0	[0..1]	[125..1]
gi\|146297044, gi... - gi\|82499025\|ref\|ZP_00884477.1\| Desulfoferrodoxin, ferrous iron-binding region:Desulfoferrodoxin Dfx:...	194.0	[0..1]	[125..1]
gi\|71836900, gi\|... - gi\|71836900\|ref\|ZP_00676667.1\| Desulfoferrodoxin, ferrous iron-binding region:Desulfoferrodoxin Dfx:...	193.0	[0..1]	[126..1]
DFX_ARCFU, DESR_... - Desulfoferrodoxin homolog OS=Archaeoglobus fulgidus GN=AF_0833 PE=3 SV=1, (O29425) Desulfoferrodoxin... DFX_ARCFU - Desulfoferrodoxin homolog OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628...	192.0	[0..1]	[124..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNQYEIYKC IHCGNIVEVL HAGGGDLVCC GEPMKLMKEG TSDGAKEKHV PVIEKTANGY  60
   61 KVTVGSVAHP MEEKHWIEWI ELVADGVSYK KFLKPGDAPE AEFCIKADKV VAREYCNLHG 120
  121 HWKAEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.69897
Match:	1dfxA
Description:	DESULFOFERRODOXIN FROM DESULFOVIBRIO DESULFURICANS, ATCC 27774
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits