YRC Public Data Repository - Protein Structure Prediction

Protein:	STMN4_RAT
Organism:	Rattus norvegicus
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STMN4_RAT.

Description	E-value	Query Range	Subject Range
gi\|50745196 - gi\|50745196\|ref\|XP_420017.1\| PREDICTED: similar to Stathmin 4 (Stathmin-like protein B3) (RB3) [Gall...	295.0	[0..1]	[189..105]
STMN4_PONPY - Stathmin-4 - Pongo pygmaeus (Orangutan) gi\|57105262 - gi\|57105262\|ref\|XP_543231.1\| PREDICTED: similar to Stathmin 4 (Stathmin-like protein B3) (RB3) isofo... STMN4_PONAB - Stathmin-4 OS=Pongo abelii GN=STMN4 PE=2 SV=1 STMN4 - stathmin-like 4 gi\|194041537, gi... - gi\|194041537\|ref\|XP_001928294.1\| PREDICTED: similar to stathmin-like 4 isoform 1 [Sus scrofa], gi\|19... gi\|109085960 - gi\|109085960\|ref\|XP_001108769.1\| PREDICTED: stathmin-like 4 isoform 2 [Macaca mulatta] gi\|149746238 - gi\|149746238\|ref\|XP_001494806.1\| PREDICTED: similar to Stathmin-4 (Stathmin-like protein B3) (RB3) i... gi\|115497618, gi... - gi\|115497618\|ref\|NP_001069048.1\| stathmin-like 4 [Bos taurus], gi\|111307063\|gb\|AAI20124.1\| Stathmin-... gi\|114619384 - gi\|114619384\|ref\|XP_528096.2\| PREDICTED: stathmin-like-protein RB3 isoform 2 [Pan troglodytes]	250.0	[0..1]	[189..1]
gi\|148704047 - gi\|148704047\|gb\|EDL35994.1\| stathmin-like 4, isoform CRA_b [Mus musculus] gi\|149030331, gi... - ref\|XP_341342.1\| stathmin-like-protein RB3 [Rattus norvegicus], gi\|2585995\|gb\|AAC95063.1\| stathmin-...	244.0	[0..1]	[189..1]
gi\|112418604, gi... - gi\|118404922\|ref\|NP_001072489.1\| stathmin-like-protein RB3 [Xenopus (Silurana) tropicalis], gi\|11241...	242.0	[0..1]	[189..1]
gi\|109085958 - gi\|109085958\|ref\|XP_001108715.1\| PREDICTED: stathmin-like 4 isoform 1 [Macaca mulatta] gi\|119583967, gi... - gi\|21361947\|ref\|NP_110422.2\| stathmin-like 4 [Homo sapiens], gi\|15079350\|gb\|AAH11520.1\| Stathmin-lik... gi\|123995087, gi... - gi\|123995087\|gb\|ABM85145.1\| stathmin-like 4 [synthetic construct], gi\|123980274\|gb\|ABM81966.1\| stath...	241.0	[0..1]	[189..1]
gi\|51593492, gi\|... - gi\|51593492\|gb\|AAH78521.1\| MGC85341 protein [Xenopus laevis], gi\|148230485\|ref\|NP_001087294.1\| MGC85...	239.0	[0..1]	[189..1]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLAAYKEKM KELPLVSLFC SCFLSDPLNK SSYKYEADTV DLNWCVISDM EVIELNKCTS  60
   61 GQSFEVILKP PSFDGVPEFN ASLPRRRDPS LEEIQKKLEA AEERRKYQEA ELLKHLAEKR 120
  121 EHEREVIQKA IEENNNFIKM AKEKLAQKME SNKENREAHL AAMLERLQEK DKHAEEVRKN 180
  181 KELKEEASR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.39794
Match:	1sa1E
Description:	TUBULIN-PODOPHYLLOTOXIN: STATHMIN-LIKE DOMAIN COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
tubulin binding	6.62779017447975	bayes_pls_golite062009
microtubule binding	5.64548039780746	bayes_pls_golite062009
cytoskeletal protein binding	5.28582290763985	bayes_pls_golite062009
protein binding	2.51615225301602	bayes_pls_golite062009
binding	2.22547233326175	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: