YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114590307
Organism:	Pan troglodytes
Length:	399 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114590307.

Description	E-value	Query Range	Subject Range
SEC62_PONAB - Translocation protein SEC62 OS=Pongo abelii GN=SEC62 PE=2 SV=1 SEC62_PONPY - Translocation protein SEC62 - Pongo pygmaeus (Orangutan)	0.0	[1..399]	[1..399]
gi\|33086592, gi\|... - gi\|77735350\|ref\|NP_001029301.1\| SEC62 homolog [Rattus norvegicus], gi\|33086592\|gb\|AAP92608.1\| Ab2-29...	0.0	[1..399]	[208..605]
gi\|109044382 - gi\|109044382\|ref\|XP_001090325.1\| PREDICTED: similar to translocation protein 1 [Macaca mulatta]	0.0	[1..399]	[1..399]
SEC62_MOUSE - Translocation protein SEC62 OS=Mus musculus GN=Sec62 PE=1 SV=1	0.0	[1..399]	[1..398]
gi\|76607701, gi\|... - gi\|76607701\|ref\|XP_878152.1\| PREDICTED: similar to translocation protein 1 isoform 3 [Bos taurus], g...	0.0	[1..399]	[1..399]
gi\|74003737 - gi\|74003737\|ref\|XP_851757.1\| PREDICTED: similar to translocation protein 1 [Canis familiaris]	0.0	[1..399]	[75..473]
SEC62_CHICK - Translocation protein SEC62 OS=Gallus gallus GN=SEC62 PE=2 SV=1	0.0	[1..399]	[1..398]
gi\|114590309 - gi\|114590309\|ref\|XP_001162758.1\| PREDICTED: similar to translocation protein-1 isoform 1 [Pan troglo... gi\|119598935, gi... - gi\|119598935\|gb\|EAW78529.1\| translocation protein 1, isoform CRA_b [Homo sapiens], gi\|119598934\|gb\|E...	0.0	[39..399]	[1..361]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAERRRHKKR IQEVGEPSKE EKAVAKYLRF NCPTKSTNMM GHRVDYFIAS KAVDCLLDSK  60
   61 WAKAKKGEEA LFTTRESVVD YCNRLLKKQF FHRALKVMKM KYDK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.208	0.224	protein transporter activity	d.58.7	RNA-binding domain, RBD

Predicted Domain #2

Region A:
Residues: [105-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIKKEKDKGK AESGKEEDKK SKKENIKDEK TKKEKEKKKD GEKEESKKEE TPGTPKKKET  60
   61 KKKFKLEPHD DQVFLDGNEV YVWIYDPVHF KTFVMGLILV IAVIAATLFP LWPAEMRVGV 120
  121 YYLSVGAGCF VASILLLAVA RCILFLIIWL ITGGRHHFWF LPNLTADVGF IDSFRPLYTH 180
  181 EYKGPKA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.08
Match:	2h8aA
Description:	No description for 2h8aA was found.

Predicted Domain #3

Region A:
Residues: [292-399]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLKKDEKSET KKQQKSDSEE KSDSEKKEDE EGKVGPGNHG TEGSGGERHS DTDSDRREDD  60
   61 RSQHSSGNGN DFEMITKEEL EQQTDGDCEE DEEEENDGET PKSSHEKS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.39
Match:	1qd7B
Description:	30S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits