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View Structure Prediction Details

Protein: GALA_RAT
Organism: Rattus norvegicus
Length: 124 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GALA_RAT.

Description E-value Query
Range
Subject
Range
GALA_MOUSE - Galanin peptides OS=Mus musculus GN=Gal PE=2 SV=1
207.0 [0..1] [124..1]
gi|29122965 - gi|29122965|gb|AAO65775.1| preprogalanin 1A [Carassius auratus]
198.0 [0..1] [123..1]
GALA_COTJA - Galanin peptides OS=Coturnix coturnix japonica GN=GAL PE=3 SV=2
189.0 [0..1] [111..1]
gi|190412 - gi|190412|gb|AAA60178.1| pro-galanin
180.0 [0..17] [124..1]
gi|114638960 - gi|114638960|ref|XP_001173776.1| PREDICTED: galanin [Pan troglodytes]
177.0 [0..1] [124..1]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGSVILLA WLLLVATLSA TLGLGMPTKE KRGWTLNSAG YLLGPHAIDN HRSFSDKHGL  60
   61 TGKRELPLEV EEGRLGSVAV PLPESNIVRT IMEFLSFLHL KEAGALDSLP GIPLATSSED 120
  121 LEQS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 41.376751
Match: PF06540.2
Description: No description for PF06540.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.231 N/A N/A a.47.5 Description not found.


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