YRC Public Data Repository - Protein Structure Prediction

Protein:	MT1_RAT
Organism:	Rattus norvegicus
Length:	61 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MT1_RAT.

Description	E-value	Query Range	Subject Range
gi\|109128677 - gi\|109128677\|ref\|XP_001097779.1\| PREDICTED: hypothetical protein [Macaca mulatta]	81.0	[0..1]	[60..163]
gi\|113426454 - gi\|113426454\|ref\|XP_944705.2\| PREDICTED: similar to Metallothionein-2 (MT-2) (Metallothionein-II) (M...	74.0	[0..1]	[61..120]
MT2_CANLF - Metallothionein-2 OS=Canis lupus familiaris GN=MT2A PE=1 SV=1 gi\|55741500 - ref\|NP_001003149.1\| metallothionein-II [Canis familiaris]	67.0	[0..1]	[61..1]
gi\|114573449 - gi\|114573449\|ref\|XP_001153690.1\| PREDICTED: hypothetical protein [Pan troglodytes]	66.0	[0..1]	[61..296]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPNCSCSTG GSCTCSSSCG CKNCKCTSCK KSCCSCCPVG CSKCAQGCVC KGASDKCTCC  60
   61 A

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Detection Method:	PSI-BLAST
Confidence:	10.154902
Match:	4mt2A
Description:	COMPARISON OF THE NMR SOLUTION STRUCTURE AND THE X-RAY CRYSTAL STRUCTURE OF RAT METALLOTHIONEIN-2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits