YRC Public Data Repository - Protein Structure Prediction

Protein:	PYY_RAT
Organism:	Rattus norvegicus
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PYY_RAT.

Description	E-value	Query Range	Subject Range
NPY_TYPNA - Pro-neuropeptide Y OS=Typhlonectes natans GN=npy PE=1 SV=1	151.0	[0..1]	[98..1]
NPY_XENLA - Pro-neuropeptide Y OS=Xenopus laevis GN=npy PE=3 SV=1	150.0	[0..1]	[98..1]
NPY_CHICK - Pro-neuropeptide Y OS=Gallus gallus GN=NPY PE=3 SV=1	150.0	[0..1]	[98..1]
gi\|112419089, gi... - gi\|134024445\|gb\|AAI35388.1\| Neuropeptide Y [Xenopus tropicalis], gi\|118405076\|ref\|NP_001072530.1\| ne...	149.0	[0..1]	[98..1]
PYYA_DANRE - Peptide YY-A OS=Danio rerio GN=pyya PE=2 SV=1	149.0	[0..1]	[98..1]
NPY_MOUSE - Pro-neuropeptide Y OS=Mus musculus GN=Npy PE=1 SV=2	147.0	[0..1]	[98..1]
gi\|124000283, gi... - gi\|124000283\|gb\|ABM87650.1\| neuropeptide Y [synthetic construct], gi\|123993319\|gb\|ABM84261.1\| neurop... HGNC:7955\|MIM:16... - Y NPY - neuropeptide Y	147.0	[0..1]	[98..1]
gi\|109116157 - gi\|109116157\|ref\|XP_001113958.1\| PREDICTED: peptide YY isoform 2 [Macaca mulatta]	147.0	[0..1]	[98..1]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAVRRPWPV MVAMLLVLLA CLGALVDAYP AKPEAPGEDA SPEELSRYYA SLRHYLNLVT  60
   61 RQRYGKREVP AALFSKLLFT DDSENLPFRS RPEGVDQW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.756	a.29.12	Description not found.
View	Download	0.560	a.64.1	Saposin
View	Download	0.560	a.64.1	Saposin
View	Download	0.535	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.535	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.483	a.64.1	Saposin
View	Download	0.483	a.64.1	Saposin
View	Download	0.472	a.8.11	Description not found.
View	Download	0.450	a.29.4	RecG, N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits