YRC Public Data Repository - Protein Structure Prediction

Protein:	RL18A_RAT
Organism:	Rattus norvegicus
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL18A_RAT.

Description	E-value	Query Range	Subject Range
gi\|73985896 - gi\|73985896\|ref\|XP_533842.2\| PREDICTED: similar to ribosomal protein L18a [Canis familiaris]	342.0	[0..1]	[176..27]
gi\|50728274 - gi\|50728274\|ref\|XP_416064.1\| PREDICTED: similar to ribosomal protein L18a; 60S ribosomal protein L18...	342.0	[0..7]	[176..241]
ENSCJAT00000027218 - null RL18A_BOVIN - 60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1 gi\|90081908 - gi\|90081908\|dbj\|BAE90235.1\| unnamed protein product [Macaca fascicularis] RPL18A - ribosomal protein L18a	334.0	[0..1]	[176..1]
gi\|55595720, gi\|... - gi\|55595720\|ref\|XP_515461.1\| PREDICTED: similar to ribosomal protein L18a isoform 4 [Pan troglodytes...	334.0	[0..1]	[176..1]
gi\|63481680, gi\|... - gi\|94363708\|ref\|XP_991730.1\| PREDICTED: similar to ribosomal protein L18a isoform 5 [Mus musculus], ...	332.0	[0..1]	[175..1]
gi\|27769162 - gi\|27769162\|gb\|AAH42256.1\| RPL18A protein [Xenopus laevis]	324.0	[0..1]	[176..3]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKASGTLREY KVVGRCLPTP KCHTPPLYRM RIFAPNHVVA KSRFWYFVSQ LKKMKKSSGE  60
   61 IVYCGQVFEK SPLRVKNFGI WLRYDSRSGT HNMYREYRDL TTAGAVTQCY RDMGARHRAR 120
  121 AHSIQIMKVE EIAAGKCRRP AVKQFHDSKI KFPLPHRVLR RQHKPRFTTK RPNTFF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	139.958607
Match:	PF01775.8
Description:	No description for PF01775.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits