YRC Public Data Repository - Protein Structure Prediction

Protein:	COX5A_RAT
Organism:	Rattus norvegicus
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX5A_RAT.

Description	E-value	Query Range	Subject Range
COX5A_MACMU - Cytochrome c oxidase subunit 5A, mitochondrial OS=Macaca mulatta GN=COX5A PE=2 SV=1	261.0	[0..1]	[146..1]
COX5A_BOVIN - Cytochrome c oxidase subunit 5A, mitochondrial OS=Bos taurus GN=COX5A PE=1 SV=2	260.0	[0..1]	[146..1]
COX5A_PANTR - Cytochrome c oxidase subunit 5A, mitochondrial OS=Pan troglodytes GN=COX5A PE=2 SV=1	257.0	[0..1]	[146..1]
gi\|123993817 - gi\|123993817\|gb\|ABM84510.1\| cytochrome c oxidase subunit Va [synthetic construct] COX5A - cytochrome c oxidase subunit Va	256.0	[0..1]	[146..1]
gi\|61358189, gi\|... - gi\|61358189\|gb\|AAX41522.1\| cytochrome c oxidase subunit Va [synthetic construct], gi\|60815694\|gb\|AAX...	255.0	[0..1]	[146..1]
COX5A_SAISC - Cytochrome c oxidase subunit 5A, mitochondrial OS=Saimiri sciureus GN=COX5A PE=2 SV=1	254.0	[0..1]	[146..1]
COX5A_MOUSE, COX... - (P12787) Cytochrome c oxidase polypeptide Va, mitochondrial precursor (EC 1.9.3.1), Cytochrome c oxi...	254.0	[0..1]	[146..1]
gi\|73997516 - gi\|73997516\|ref\|XP_853952.1\| PREDICTED: similar to Cytochrome c oxidase polypeptide Va, mitochondria...	244.0	[0..1]	[146..1]
gi\|62859041, gi\|... - gi\|62859041\|ref\|NP_001017049.1\| cytochrome c oxidase, subunit Va [Xenopus (Silurana) tropicalis], gi...	241.0	[0..1]	[145..1]

Back

Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAAALRRCT AAAAARGLLH PVSAPSPAAA VCSIRCYSHG SHETDEEFDA RWVTYFNKPD  60
   61 IDAWELRKGM NTLVGYDLVP EPKIIDAALR ACRRLNDFAS AVRILEVVKD KAGPHKEIYP 120
  121 YVIQELRPTL NELGISTPEE LGLDKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.045757
Match:	1occE
Description:	Cytochrome c oxidase subunit E
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits