YRC Public Data Repository - Protein Structure Prediction

Protein:	SG2A2_RAT
Organism:	Rattus norvegicus
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SG2A2_RAT.

Description	E-value	Query Range	Subject Range
SG2A1_RAT - Secretoglobin family 2A member 1 OS=Rattus norvegicus GN=Scgb2a1 PE=2 SV=1	157.0	[0..1]	[95..1]
gi\|109105903 - gi\|109105903\|ref\|XP_001118476.1\| PREDICTED: similar to secretoglobin, family 2A, member 1 [Macaca mu...	155.0	[0..1]	[92..68]
gi\|6682330 - gi\|6682330\|emb\|CAB64660.1\| heteroglobin B1 subunit [Mesocricetus auratus]	144.0	[0..1]	[91..1]
gi\|126722998, gi... - gi\|126722998\|ref\|NP_001075564.1\| lipophilin CL2 [Oryctolagus cuniculus], gi\|11993600\|gb\|AAG42806.1\|A... gi\|37182585 - gi\|37182585\|gb\|AAQ89094.1\| KVVM3106 [Homo sapiens]	139.0	[0..1]	[91..1]
gi\|114637952 - gi\|114637952\|ref\|XP_508486.2\| PREDICTED: similar to mammaglobin B precursor [Pan troglodytes]	129.0	[0..14]	[95..14]
SCGB2A1 - secretoglobin, family 2A, member 1	128.0	[0..15]	[95..15]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLVFLFLLV TIPICCYASG SGCSILDEVI RGTINSTVTL HDYMKLVKPY VQDHFTEKAV  60
   61 KQFKQCFLDQ TDKTLENVGV MMEAIFNSES CQQPS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.12
Match:	1utrA
Description:	Clara cell 17kDa protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits