YRC Public Data Repository - Protein Structure Prediction

Protein:	GRCA_ECOK1
Organism:	Escherichia coli APEC O1
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRCA_ECOK1.

Description	E-value	Query Range	Subject Range
gi\|237705089, gi... - gi\|237705089\|ref\|ZP_04535570.1\| yfiD [Escherichia sp. 3_2_53FAA], gi\|226901455\|gb\|EEH87714.1\| yfiD [... gi\|26109350, gi\|... - gi\|26248944\|ref\|NP_754984.1\| Protein yfiD [Escherichia coli CFT073], gi\|26109350\|gb\|AAN81552.1\|AE016... gi\|91211906, gi\|... - gi\|91211906\|ref\|YP_541892.1\| protein YfiD [Escherichia coli UTI89], gi\|91073480\|gb\|ABE08361.1\| prote...	202.0	[0..1]	[127..7]
YFID_ECOLI, GRCA... - (P33633) Protein yfiD, Autonomous glycyl radical cofactor - Escherichia coli gi\|89109385, gi\|... - gi\|89109385\|ref\|AP_003165.1\| pyruvate formate lyase subunit [Escherichia coli str. K-12 substr. W311... gi\|13362916, gi\|... - gi\|15832699\|ref\|NP_311472.1\| autonomous glycyl radical cofactor GrcA [Escherichia coli O157:H7 str. ... gi\|187770653, gi... - gi\|187770653\|gb\|EDU34497.1\| autonomous glycyl radical cofactor [Escherichia coli O157:H7 str. EC4196... gi\|189362269, gi... - gi\|189362269\|gb\|EDU80688.1\| autonomous glycyl radical cofactor [Escherichia coli O157:H7 str. EC4486... gi\|189370144, gi... - gi\|189370144\|gb\|EDU88560.1\| autonomous glycyl radical cofactor [Escherichia coli O157:H7 str. EC869]... gi\|168778558, gi... - gi\|189003388\|gb\|EDU72374.1\| autonomous glycyl radical cofactor [Escherichia coli O157:H7 str. EC4076... GRCA_ECODH - Autonomous glycyl radical cofactor OS=Escherichia coli (strain K12 / DH10B) GN=grcA PE=3 SV=1 gi\|189376188, gi... - gi\|189376188\|gb\|EDU94604.1\| autonomous glycyl radical cofactor [Escherichia coli O157:H7 str. EC508]... gi\|208805911, gi... - gi\|208805911\|ref\|ZP_03248248.1\| autonomous glycyl radical cofactor [Escherichia coli O157:H7 str. EC... gi\|195936727 - gi\|195936727\|ref\|ZP_03082109.1\| autonomous glycyl radical cofactor GrcA [Escherichia coli O157:H7 st... gi\|189365093, gi... - gi\|189365093\|gb\|EDU83509.1\| autonomous glycyl radical cofactor [Escherichia coli O157:H7 str. EC4501... gi\|189355275, gi... - gi\|189355275\|gb\|EDU73694.1\| autonomous glycyl radical cofactor [Escherichia coli O157:H7 str. EC4401... GRCA_SHIBS - Autonomous glycyl radical cofactor OS=Shigella boydii serotype 4 (strain Sb227) GN=grcA PE=3 SV=1 gi\|188491291, gi... - gi\|75513189\|ref\|ZP_00735631.1\| COG3445: Acid-induced glycyl radical enzyme [Escherichia coli 53638],... GRCA_SHISS - Autonomous glycyl radical cofactor OS=Shigella sonnei (strain Ss046) GN=grcA PE=3 SV=1 GRCA_ECOLC - Autonomous glycyl radical cofactor OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=grc... GRCA_ECO24 - Autonomous glycyl radical cofactor OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=grcA PE=3... gi\|208738696, gi... - gi\|208818573\|ref\|ZP_03258893.1\| autonomous glycyl radical cofactor [Escherichia coli O157:H7 str. EC... GRCA_ECOHS - Autonomous glycyl radical cofactor OS=Escherichia coli O9:H4 (strain HS) GN=grcA PE=3 SV=1 gi\|208734189, gi... - gi\|208812912\|ref\|ZP_03254241.1\| autonomous glycyl radical cofactor [Escherichia coli O157:H7 str. EC... gi\|194423387, gi... - gi\|83586769\|ref\|ZP_00925400.1\| COG3445: Acid-induced glycyl radical enzyme [Escherichia coli 101-1],... GRCA_ECOSE - Autonomous glycyl radical cofactor OS=Escherichia coli (strain SE11) GN=grcA PE=3 SV=1 GRCA_SHIB3 - Autonomous glycyl radical cofactor OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=gr... GRCA_ECO5E - Autonomous glycyl radical cofactor OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=grcA PE=3 S... gi\|192958376, gi... - gi\|75237675\|ref\|ZP_00721691.1\| COG3445: Acid-induced glycyl radical enzyme [Escherichia coli E110019... GRCA_ECO8A - Autonomous glycyl radical cofactor OS=Escherichia coli O8 (strain IAI1) GN=grcA PE=3 SV=1 EG11784 - autonomous glycyl radical cofactor / Autonomous glycine radical cofactor; can reactivate pyruvate fo... gi\|193064113, gi... - gi\|75258004\|ref\|ZP_00729478.1\| COG3445: Acid-induced glycyl radical enzyme [Escherichia coli E22], g... gi\|124499838, gi... - gi\|124529531\|ref\|ZP_01700501.1\| formate C-acetyltransferase glycine radical [Escherichia coli B], gi... gi\|217319577, gi... - gi\|217327210\|ref\|ZP_03443293.1\| autonomous glycyl radical cofactor [Escherichia coli O157:H7 str. TW... gi\|75209512, gi\|... - gi\|75209512\|ref\|ZP_00709737.1\| COG3445: Acid-induced glycyl radical enzyme [Escherichia coli B171], ... GRCA_ECO55 - Autonomous glycyl radical cofactor OS=Escherichia coli (strain 55989 / EAEC) GN=grcA PE=3 SV=1 gi\|75228846, gi\|... - gi\|75228846\|ref\|ZP_00715447.1\| COG3445: Acid-induced glycyl radical enzyme [Escherichia coli B7A], g... GRCA_ECO81 - Autonomous glycyl radical cofactor OS=Escherichia coli O81 (strain ED1a) GN=grcA PE=3 SV=1 GRCA_ECO57 - Autonomous glycyl radical cofactor OS=Escherichia coli O157:H7 GN=grcA PE=3 SV=1 gi\|83570816, gi\|... - gi\|83570816\|ref\|ZP_00922259.1\| COG3445: Acid-induced glycyl radical enzyme [Shigella dysenteriae 101... GRCA_ECOBW - Autonomous glycyl radical cofactor OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=grcA PE=3 S... EG11784 - autonomous glycyl radical cofactor / Autonomous glycine radical cofactor; can reactivate pyruvate fo... gi\|251785906, gi... - gi\|251785906\|ref\|YP_003000210.1\| hypothetical protein B21_02437 [Escherichia coli BL21], gi\|24237817... gi\|254289315, gi... - gi\|254289315\|ref\|YP_003055063.1\| pyruvate formate lyase subunit [Escherichia coli BL21(DE3)], gi\|253... gi\|253974455, gi... - gi\|254162554\|ref\|YP_003045662.1\| pyruvate formate lyase subunit [Escherichia coli B str. REL606], gi... gi\|254794530, gi... - gi\|254794530\|ref\|YP_003079367.1\| pyruvate formate lyase subunit [Escherichia coli O157:H7 str. TW143...	202.0	[0..1]	[127..1]
GRCA_SALTY - Autonomous glycyl radical cofactor OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) G... GRCA_SALPK - Autonomous glycyl radical cofactor OS=Salmonella paratyphi A (strain AKU_12601) GN=grcA PE=3 SV=1 gi\|29140799, gi\|... - gi\|29140799\|ref\|NP_804141.1\| autonomous glycyl radical cofactor GrcA [Salmonella enterica subsp. ent... gi\|200388273, gi... - gi\|200388273\|ref\|ZP_03214885.1\| autonomous glycyl radical cofactor [Salmonella enterica subsp. enter... gi\|204321303, gi... - gi\|204929584\|ref\|ZP_03220658.1\| autonomous glycyl radical cofactor [Salmonella enterica subsp. enter... GRCA_SALTI - Autonomous glycyl radical cofactor OS=Salmonella typhi GN=grcA PE=3 SV=1 GRCA_SALG2 - Autonomous glycyl radical cofactor OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=grcA PE=... gi\|194468841, gi... - gi\|194468841\|ref\|ZP_03074825.1\| autonomous glycyl radical cofactor [Salmonella enterica subsp. enter... GRCA_SALSV - Autonomous glycyl radical cofactor OS=Salmonella schwarzengrund (strain CVM19633) GN=grcA PE=3 SV=1 gi\|16761504 - gi\|16761504\|ref\|NP_457121.1\| autonomous glycyl radical cofactor GrcA [Salmonella enterica subsp. ent... GRCA_SALA4 - Autonomous glycyl radical cofactor OS=Salmonella agona (strain SL483) GN=grcA PE=3 SV=1 gi\|197242041, gi... - gi\|197263786\|ref\|ZP_03163860.1\| autonomous glycyl radical cofactor [Salmonella enterica subsp. enter... gi\|168468060, gi... - gi\|195628854\|gb\|EDX48268.1\| autonomous glycyl radical cofactor [Salmonella enterica subsp. enterica ... gi\|238912711 - gi\|238912711\|ref\|ZP_04656548.1\| autonomous glycyl radical cofactor GrcA [Salmonella enterica subsp. ... gi\|205340548, gi... - gi\|205340548\|gb\|EDZ27312.1\| autonomous glycyl radical cofactor [Salmonella enterica subsp. enterica ... GRCA_SALNS - Autonomous glycyl radical cofactor OS=Salmonella newport (strain SL254) GN=grcA PE=3 SV=1 GRCA_SALHS - Autonomous glycyl radical cofactor OS=Salmonella heidelberg (strain SL476) GN=grcA PE=3 SV=1 gi\|205333529, gi... - gi\|205333529\|gb\|EDZ20293.1\| autonomous glycyl radical cofactor [Salmonella enterica subsp. enterica ... gi\|197288850, gi... - gi\|197288850\|gb\|EDY28223.1\| autonomous glycyl radical cofactor [Salmonella enterica subsp. enterica ... gi\|205336139, gi... - gi\|205336139\|gb\|EDZ22903.1\| autonomous glycyl radical cofactor [Salmonella enterica subsp. enterica ... gi\|205349659, gi... - gi\|205349659\|gb\|EDZ36290.1\| autonomous glycyl radical cofactor [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=yfiD] [protein=autonomous glycyl radical cofactor GrcA] [protein_id=YP_005238768.1] [location=... GRCA_SALTY - Autonomous glycyl radical cofactor OS=Salmonella typhimurium GN=grcA PE=3 SV=1 gi\|213857769 - gi\|213857769\|ref\|ZP_03384740.1\| autonomous glycyl radical cofactor GrcA [Salmonella enterica subsp. ... gi\|214000654 - gi\|214000654\|ref\|ZP_03411389.1\| autonomous glycyl radical cofactor GrcA [Salmonella enterica subsp. ... GRCA_SALPA - Autonomous glycyl radical cofactor OS=Salmonella paratyphi A GN=grcA PE=3 SV=1 GRCA_SALPC - Autonomous glycyl radical cofactor OS=Salmonella paratyphi C (strain RKS4594) GN=grcA PE=3 SV=1 GRCA_SALTI - Autonomous glycyl radical cofactor OS=Salmonella typhi GN=grcA PE=3 SV=1 gi\|213425265 - gi\|213425265\|ref\|ZP_03358015.1\| autonomous glycyl radical cofactor GrcA [Salmonella enterica subsp. ... gi\|213580320 - gi\|213580320\|ref\|ZP_03362146.1\| autonomous glycyl radical cofactor GrcA [Salmonella enterica subsp. ... gi\|213612388 - gi\|213612388\|ref\|ZP_03370214.1\| autonomous glycyl radical cofactor GrcA [Salmonella enterica subsp. ... gi\|213646342 - gi\|213646342\|ref\|ZP_03376395.1\| autonomous glycyl radical cofactor GrcA [Salmonella enterica subsp. ... GRCA_SALEP - Autonomous glycyl radical cofactor OS=Salmonella enteritidis PT4 (strain P125109) GN=grcA PE=3 SV=1 gi\|213021771 - gi\|213021771\|ref\|ZP_03336218.1\| autonomous glycyl radical cofactor GrcA [Salmonella enterica subsp. ... gi\|213161477 - gi\|213161477\|ref\|ZP_03347187.1\| autonomous glycyl radical cofactor GrcA [Salmonella enterica subsp. ... gi\|213420576 - gi\|213420576\|ref\|ZP_03353642.1\| autonomous glycyl radical cofactor GrcA [Salmonella enterica subsp. ... GRCA_SALPB - Autonomous glycyl radical cofactor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=grcA P... GRCA_SALPB - Autonomous glycyl radical cofactor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=grcA P... GRCA_SALCH - Autonomous glycyl radical cofactor OS=Salmonella choleraesuis GN=grcA PE=3 SV=1 GRCA_SALAR - Autonomous glycyl radical cofactor OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980... GRCA_SALCH - Autonomous glycyl radical cofactor OS=Salmonella choleraesuis (strain SC-B67) GN=grcA PE=3 SV=1 GRCA_SALPA - Autonomous glycyl radical cofactor OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=grcA PE=... GRCA_SALTY - Autonomous glycyl radical cofactor OS=Salmonella typhimurium GN=grcA PE=3 SV=1 gi\|167553667, gi... - gi\|205321949\|gb\|EDZ09788.1\| autonomous glycyl radical cofactor [Salmonella enterica subsp. enterica ... gi\|205327356, gi... - gi\|205327356\|gb\|EDZ14120.1\| autonomous glycyl radical cofactor [Salmonella enterica subsp. enterica ... GRCA_SALCH - Autonomous glycyl radical cofactor OS=Salmonella choleraesuis GN=grcA PE=3 SV=1	201.0	[0..1]	[127..1]
GRCA_SHIF8 - Autonomous glycyl radical cofactor OS=Shigella flexneri serotype 5b (strain 8401) GN=grcA PE=3 SV=1	200.0	[0..1]	[127..1]
GRCA_SHIFL - Autonomous glycyl radical cofactor OS=Shigella flexneri GN=grcA PE=3 SV=2 gi\|56383695, gi\|... - gi\|56480144\|ref\|NP_708430.2\| autonomous glycyl radical cofactor GrcA [Shigella flexneri 2a str. 301]... gi\|30063980, gi\|... - gi\|30063980\|ref\|NP_838151.1\| autonomous glycyl radical cofactor GrcA [Shigella flexneri 2a str. 2457...	199.0	[0..1]	[127..1]
gi\|238788236, gi... - gi\|77974735\|ref\|ZP_00830274.1\| COG3445: Acid-induced glycyl radical enzyme [Yersinia frederiksenii A...	199.0	[0..1]	[127..1]
GRCA_SHIDS - Autonomous glycyl radical cofactor OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=grcA PE=3 SV...	198.0	[0..1]	[127..1]
gi\|238784176, gi... - gi\|77958600\|ref\|ZP_00822631.1\| COG3445: Acid-induced glycyl radical enzyme [Yersinia bercovieri ATCC...	197.0	[0..1]	[127..1]
gi\|25285925 - gi\|25285925\|pir\|\|C85904 probable formate acetyltransferase yfiD [imported] - Escherichia coli (strai... gi\|15803106, gi\|... - gi\|15803106\|ref\|NP_289137.1\| autonomous glycyl radical cofactor GrcA [Escherichia coli O157:H7 EDL93...	197.0	[0..1]	[127..1]
gi\|77963364, gi\|... - gi\|77963364\|ref\|ZP_00827174.1\| COG3445: Acid-induced glycyl radical enzyme [Yersinia mollaretii ATCC...	197.0	[0..1]	[127..1]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITGIQITKA ANDDLLNSFW LLDSEKGEAR CIVAKAGFAE DEVVAVSKLG DIEYREVPVE  60
   61 VKPEVRVEGG QHLNVNVLRR ETLEDAVKHP EKYPQLTIRV SGYAVRFNSL TPEQQRDVIA 120
  121 RTFTESL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	1h16A
Description:	Pyruvate formate-lyase, PFL
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits