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View Structure Prediction Details

Protein: PDXH_BURM7
Organism: Burkholderia mallei NCTC 10247
Length: 214 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDXH_BURM7.

Description E-value Query
Range
Subject
Range
gi|84355579 - gi|84355579|ref|ZP_00980459.1| COG0259: Pyridoxamine-phosphate oxidase [Burkholderia cenocepacia PC1...
PDXH_BURCH - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia cenocepacia (strain HI2424) GN=pdxH PE=...
PDXH_BURCA - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia cenocepacia (strain AU 1054) GN=pdxH PE...
311.0 [0..1] [214..1]

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Predicted Domain #1
Region A:
Residues: [1-214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLADLRTN YSRASLDAAD VNPNPFVQFD VWFKEALDAQ LPEPNTMTLA TVDESGRPSA  60
   61 RIVLIKGADE RGFVFFTNYE SRKGRELAHN PNAALLFYWI ELERQVRVEG RIEKTSEEES 120
  121 DRYFASRPLG SRIGAWASEQ SAVIESRALL EAREKEIGAR FGENPPRPPH WGGYRLVPSS 180
  181 IEFWQGRPSR LHDRLLYTRD AASASGWKIT RLAP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 77.09691
Match: 1g76A
Description: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
pyridoxamine-phosphate oxidase activity 3.81533880638523 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor 1.18444956617957 bayes_pls_golite062009
catalytic activity 0.660906721832294 bayes_pls_golite062009
oxidoreductase activity 0.0268904833845668 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle