YRC Public Data Repository - Protein Structure Prediction

Protein:	ARL8B_RAT
Organism:	Rattus norvegicus
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARL8B_RAT.

Description	E-value	Query Range	Subject Range
gi\|1370166 - gi\|1370166\|emb\|CAA98160.1\| RAB1C [Lotus japonicus]	4.0E-45	[16..186]	[4..174]
gi\|4586580 - gi\|4586580\|dbj\|BAA76422.1\| rab-type small GTP-binding protein [Cicer arietinum]	6.0E-45	[16..186]	[4..174]
gi\|303750, gi\|738940 - gi\|738940\|prf\|\|2001457H GTP-binding protein, gi\|303750\|dbj\|BAA02116.1\| GTP-binding protein [Pisum sa...	2.0E-44	[16..186]	[4..174]
gi\|50738954 - gi\|50738954\|ref\|XP_419342.1\| PREDICTED: similar to ras-related protein [Gallus gallus]	2.0E-44	[18..185]	[197..364]
gi\|1616614 - gi\|1616614\|emb\|CAA69701.1\| small GTP-binding protein [Nicotiana plumbaginifolia]	2.0E-44	[16..186]	[4..174]
RIC1_ORYSJ - Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2 gi\|125526416 - gi\|125526416\|gb\|EAY74530.1\| hypothetical protein OsI_02420 [Oryza sativa Indica Group] RIC1_ORYSA - Ras-related protein RIC1 - Oryza sativa (Rice)	2.0E-44	[16..186]	[4..174]
RIC1_ORYSA - (P40392) Ras-related protein RIC1	2.0E-44	[16..186]	[4..174]
gi\|89257579 - gi\|89257579\|gb\|ABD65068.1\| GTP-binding protein, putative [Brassica oleracea]	3.0E-44	[16..186]	[4..174]
RAD2C_ARATH - Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=2 SV=1	4.0E-44	[16..186]	[4..174]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLALISRLLD WFRSLFWKEE MELTLVGLQY SGKTTFVNVI ASGQFSEDMI PTVGFNMRKV  60
   61 TKGNVTIKIW DIGGQPRFRS MWERYCRGVN AIVYMIDAAD REKIEASRNE LHNLLDKPQL 120
  121 QGIPVLVLGN KRDLPNALDE KQLIEKMNLS AIQDREICCY SISCKEKDNI DITLQWLIQH 180
  181 SKSRRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.522879
Match:	2h18A
Description:	No description for 2h18A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits