YRC Public Data Repository - Protein Structure Prediction

Protein:	T22D3_RAT
Organism:	Rattus norvegicus
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for T22D3_RAT.

Description	E-value	Query Range	Subject Range
TSC22D3 - TSC22 domain family, member 3 T22D3_PONPY - TSC22 domain family protein 3 - Pongo pygmaeus (Orangutan) gi\|190690963, gi... - gi\|190690963\|gb\|ACE87256.1\| TSC22 domain family, member 3 protein [synthetic construct], gi\|19068959... T22D3_PONAB - TSC22 domain family protein 3 OS=Pongo abelii GN=TSC22D3 PE=2 SV=1 gi\|109131843 - gi\|109131843\|ref\|XP_001096368.1\| PREDICTED: TSC22 domain family, member 3 isoform 7 [Macaca mulatta] ENSPTRT00000054922 - null	209.0	[0..1]	[134..1]
gi\|74008044 - gi\|74008044\|ref\|XP_549177.2\| PREDICTED: similar to TSC22 domain family 3 isoform 1 [Canis familiaris...	203.0	[0..1]	[134..1]
gi\|115334987, gi... - gi\|116175426\|ref\|NP_001070702.1\| TSC22 domain family, member 3 [Gallus gallus], gi\|115334987\|gb\|ABI9...	192.0	[0..1]	[134..1]
T22D3_MOUSE - TSC22 domain family protein 3 OS=Mus musculus GN=Tsc22d3 PE=1 SV=2	188.0	[0..1]	[114..1]
gi\|27696341, gi\|... - gi\|27696341\|gb\|AAH43841.1\| Dsipi-prov protein [Xenopus laevis], gi\|148227099\|ref\|NP_001080286.1\| glu...	186.0	[0..1]	[119..1]
gi\|47225229 - gi\|47225229\|emb\|CAG09729.1\| unnamed protein product [Tetraodon nigroviridis]	184.0	[0..1]	[111..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTEMYQTPM EVAVYQLHNF SISFFSSLLG GDVVSVKLDN SASGASVVAL DNKIEQAMDL  60
   61 VKNHLMYAVR EEVEVLKEQI RELVEKNSQL ERENTLLKTL ASPEQLEKFQ SRLSPEEPAP 120
  121 EAPETPEAPG GSAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	1dipA
Description:	Delta-sleep-inducing peptide immunoreactive peptide
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits