YRC Public Data Repository - Protein Structure Prediction

Protein:	GIP_RAT
Organism:	Rattus norvegicus
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GIP_RAT.

Description	E-value	Query Range	Subject Range
gi\|109099959 - gi\|109099959\|ref\|XP_001093871.1\| PREDICTED: similar to glucagon preproprotein [Macaca mulatta]	156.0	[0..1]	[140..84]
GLUC_RAT - Glucagon OS=Rattus norvegicus GN=Gcg PE=1 SV=1	154.0	[0..1]	[140..1]
GLUC_MESAU - Glucagon OS=Mesocricetus auratus GN=GCG PE=2 SV=2	153.0	[0..1]	[140..1]
gi\|223737, gi\|31778 - gi\|31778\|emb\|CAA24759.1\| precursor [Homo sapiens], gi\|223737\|prf\|\|0908306A glucagon,prepro	152.0	[0..1]	[140..1]
gi\|30583853, gi\|... - gi\|60653543\|gb\|AAX29465.1\| glucagon [synthetic construct], gi\|60653541\|gb\|AAX29464.1\| glucagon [synt...	152.0	[0..1]	[140..1]
GLUC_CANLF - Glucagon OS=Canis lupus familiaris GN=GCG PE=1 SV=2	151.0	[0..1]	[140..1]
GLUC_MOUSE - Glucagon OS=Mus musculus GN=Gcg PE=1 SV=1	151.0	[0..1]	[140..1]
gi\|69240 - gi\|69240\|pir\|\|GCBO glucagon precursor - bovine	150.0	[0..1]	[140..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVALKTCSLL LVLLFLAVGL GEKEEVEFRS HAKFAGPRPR GPRYAEGTFI SDYSIAMDKI  60
   61 RQQDFVNWLL AQKGKKNDWK HNLTQREARA LELAGQSQRN EEKEAQGSSL PKSLSDEDVL 120
  121 RDLLIQELLA WMADQAELCR LRSQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits