YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|124119235, gi...
Organism:	Vibrio cholerae MAK 757
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124119235, gi....

Description	E-value	Query Range	Subject Range
gi\|150422653, gi... - gi\|254291463\|ref\|ZP_04962255.1\| peptide methionine sulfoxide reductase [Vibrio cholerae AM-19226], g... gi\|116216904, gi... - gi\|75823259\|ref\|ZP_00752774.1\| COG0225: Peptide methionine sulfoxide reductase [Vibrio cholerae RC38... gi\|125621563, gi... - gi\|75820174\|ref\|ZP_00750228.1\| COG0225: Peptide methionine sulfoxide reductase [Vibrio cholerae V51]... tr\|D7HFI3\|D7HFI3... - Peptide methionine sulfoxide reductase MsrA OS=Vibrio cholerae RC385 GN=msrA PE=3 SV=1	354.0	[0..1]	[212..1]
gi\|75815982, gi\|... - gi\|75815982\|ref\|ZP_00746467.1\| COG0225: Peptide methionine sulfoxide reductase [Vibrio cholerae V52]...	352.0	[0..1]	[212..1]
gi\|22294607, gi\|... - gi\|22298428\|ref\|NP_681675.1\| methionine sulfoxide reductase A [Thermosynechococcus elongatus BP-1], ...	347.0	[0..3]	[206..9]
gi\|86605185, gi\|... - gi\|86605185\|ref\|YP_473948.1\| methionine-S-sulfoxide reductase [Cyanobacteria bacterium Yellowstone A... gi\|86605185, gi\|... - gi\|86605185\|ref\|YP_473948.1\| methionine-S-sulfoxide reductase [Synechococcus sp. JA-3-3Ab], gi\|86553...	347.0	[0..1]	[207..9]
gi\|86607734 - gi\|86607734\|ref\|YP_476496.1\| methionine-S-sulfoxide reductase [Cyanobacteria bacterium Yellowstone B... gi\|86556276, gi\|... - gi\|86607734\|ref\|YP_476496.1\| methionine-S-sulfoxide reductase [Synechococcus sp. JA-2-3B'a(2-13)], g...	343.0	[0..1]	[207..9]
gi\|186684368, gi... - gi\|23126307\|ref\|ZP_00108208.1\| COG0225: Peptide methionine sulfoxide reductase [Nostoc punctiforme P...	342.0	[0..3]	[207..8]
gi\|88939647, gi\|... - gi\|88939647\|ref\|ZP_01145094.1\| peptide methionine sulfoxide reductase [Acidiphilium cryptum JF-5], g...	340.0	[0..4]	[207..15]
gi\|50745232 - gi\|50745232\|ref\|XP_420035.1\| PREDICTED: similar to peptide methionine sulfoxide reductase [Gallus ga...	339.0	[0..4]	[207..22]
MSRA_OCHAN - Peptide methionine sulfoxide reductase MsrA OS=Ochrobactrum anthropi GN=msrA PE=2 SV=1	339.0	[0..3]	[207..9]
gi\|130492918, gi... - gi\|56207585\|emb\|CAI20959.1\| novel protein similar to vertebrate methionine sulfoxide reductase A (MS...	339.0	[0..1]	[207..22]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDKQTMVTA HNALPGRTTA MSIDDTHFVN GSSLTAAPQS GQQQILIGMG CFWGAERLFW  60
   61 QLDGVISTSV GYSGGFTPNP TYEEVCSGKT GHTEVVRVIF DPERLPLTEL LRAFWERHDP 120
  121 TQGMRQGNDR GTQYRSAIYT FSEDQREIAE ASKAAYQALL TAQHRPSITT EILPAGAYYF 180
  181 AETYHQQYLA KNPNGYCGLG GTGVCFPPHS TL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.30103
Match:	1fvaA
Description:	Peptide methionine sulfoxide reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	7.33214277590189	bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity	7.05871760837663	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	4.45221508174489	bayes_pls_golite062009
catalytic activity	2.02168745464921	bayes_pls_golite062009
binding	1.21670366786992	bayes_pls_golite062009
oxidoreductase activity	1.10659465297393	bayes_pls_golite062009
protein binding	0.370301035521826	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: