YRC Public Data Repository - Protein Structure Prediction

Protein:	RL22_RAT
Organism:	Rattus norvegicus
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL22_RAT.

Description	E-value	Query Range	Subject Range
gi\|109088596 - gi\|109088596\|ref\|XP_001082032.1\| PREDICTED: similar to 60S ribosomal protein L22 (Heparin-binding pr...	208.0	[0..1]	[119..1]
gi\|94384550, gi\|... - gi\|94384550\|ref\|XP_979887.1\| PREDICTED: similar to 60S ribosomal protein L22 (Heparin-binding protei...	200.0	[0..21]	[127..31]
gi\|34859197, gi\|... - gi\|34859197\|ref\|XP_345432.1\| PREDICTED: similar to RIKEN cDNA 3110001N18 [Rattus norvegicus], gi\|109...	197.0	[0..1]	[128..1]
gi\|73950656 - gi\|73950656\|ref\|XP_855207.1\| PREDICTED: similar to 60S ribosomal protein L22 (Heparin binding protei...	191.0	[0..1]	[120..1]
gi\|240108894 - gi\|240108894\|gb\|EER27063.1\| 60S ribosomal protein L22, putative [Coccidioides posadasii C735 delta S... gi\|90298783, gi\|... - gi\|90298783\|gb\|EAS28414.1\| 60S ribosomal protein L22 [Coccidioides immitis RS], gi\|119175604\|ref\|XP_...	191.0	[0..1]	[127..1]
gi\|125829593, gi... - gi\|83415112\|ref\|NP_001032766.1\| ribosomal protein L22 [Danio rerio], gi\|78394989\|gb\|AAI07819.1\| Zgc:...	189.0	[0..1]	[119..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPVKKLVAK GGKKKKQVLK FTLDCTHPVE DGIMDAANFE QFLQERIKVN GKAGNLGGGV  60
   61 VTIERSKSKI TVTSEEPFSK RYLKYLTKKY LKKNNLRDWL RVVANSKESY ELRYFQINQD 120
  121 EEEEEDED

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	85.075721
Match:	PF01776.8
Description:	No description for PF01776.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits