YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153168463, gi...
Organism:	Listeria monocytogenes FSL N1-017
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153168463, gi....

Description	E-value	Query Range	Subject Range
gi\|23099450, gi\|... - gi\|23099450\|ref\|NP_692916.1\| putative monovalent cation/H+ antiporter subunit E [Oceanobacillus ihey...	168.0	[0..1]	[157..1]
MRPE_BACSU - Na(+)/H(+) antiporter subunit E OS=Bacillus subtilis GN=mrpE PE=1 SV=1 gi\|50812287, gi\|... - gi\|50812287\|ref\|YP_054591.1\| putative monovalent cation/H+ antiporter subunit E [Bacillus subtilis s...	165.0	[0..1]	[158..1]
gi\|15613878, gi\|... - gi\|15613878\|ref\|NP_242181.1\| putative monovalent cation/H+ antiporter subunit E [Bacillus halodurans... gi\|25345883 - pir\|\|C83814 Na+/H+ antiporter BH1315 [imported] - Bacillus halodurans (strain C-125)	164.0	[0..1]	[157..1]
gi\|154163172 - gi\|154163172\|gb\|ABS70477.1\| MrpE [synthetic construct] MRPE_BACPE - Na(+)/H(+) antiporter subunit E OS=Bacillus pseudofirmus (strain OF4) GN=mrpE PE=1 SV=1 gi\|6650387 - gi\|6650387\|gb\|AAF21816.1\|AF097740_5 multiple resistance and pH regulation related protein E [Bacillu... MRPE_BACPF - Na(+)/H(+) antiporter subunit E OS=Bacillus pseudofirmus GN=mrpE PE=1 SV=1	161.0	[0..1]	[157..1]
gi\|16415003, gi\|... - pir\|\|AD1742 protein involved in resistance to cholate and to NA(+) and in pH homeostasis homolog lin... gi\|16801543 - gi\|16801543\|ref\|NP_471811.1\| putative monovalent cation/H+ antiporter subunit E [Listeria innocua Cl...	161.0	[0..1]	[159..1]
gi\|68189865, gi\|... - gi\|69279609\|ref\|ZP_00614415.1\| Protein of unknown function DUF68 [Mesorhizobium sp. BNC1], gi\|681898...	158.0	[0..6]	[158..5]
gi\|39997437, gi\|... - gi\|39997437\|ref\|NP_953388.1\| putative monovalent cation/H+ antiporter subunit E [Geobacter sulfurred...	157.0	[0..5]	[158..4]
MNHE1_STAAE - Na(+)/H(+) antiporter subunit E1 OS=Staphylococcus aureus (strain Newman) GN=mnhE1 PE=3 SV=1 gi\|221139382 - gi\|221139382\|ref\|ZP_03564181.1\| putative monovalent cation/H+ antiporter subunit E [Staphylococcus a... gi\|227246552, gi... - gi\|227557051\|ref\|ZP_03987098.1\| monovalent cation/H+ antiporter subunit E [Staphylococcus aureus sub... MNHE1_STAAT - Na(+)/H(+) antiporter subunit E1 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=mnhE1 PE=3 SV... gi\|227852501, gi... - gi\|227899114\|ref\|ZP_04016919.1\| monovalent cation/H+ antiporter subunit E [Staphylococcus aureus sub... MNHE1_STAAS - Na(+)/H(+) antiporter subunit E1 OS=Staphylococcus aureus (strain MSSA476) GN=mnhE1 PE=3 SV=1 gi\|251813844, gi... - gi\|251813844\|ref\|ZP_04828317.1\| monovalent cation/H+ antiporter subunit E [Staphylococcus aureus sub... gi\|221140430 - gi\|221140430\|ref\|ZP_03564923.1\| putative monovalent cation/H+ antiporter subunit E [Staphylococcus a... gi\|253316812 - gi\|253316812\|ref\|ZP_04840025.1\| putative monovalent cation/H+ antiporter subunit E [Staphylococcus a... MNHE1_STAAW - Na(+)/H(+) antiporter subunit E1 OS=Staphylococcus aureus (strain MW2) GN=mnhE1 PE=3 SV=1 gi\|253724798, gi... - gi\|253731555\|ref\|ZP_04865720.1\| monovalent cation/H+ antiporter subunit E [Staphylococcus aureus sub... MNHE1_STAAR - Na(+)/H(+) antiporter subunit E1 OS=Staphylococcus aureus (strain MRSA252) GN=mnhE1 PE=3 SV=1 gi\|253732697, gi... - gi\|253732697\|ref\|ZP_04866862.1\| monovalent cation/H+ antiporter subunit E [Staphylococcus aureus sub... gi\|255005738 - gi\|255005738\|ref\|ZP_05144339.2\| putative monovalent cation/H+ antiporter subunit E [Staphylococcus a... MNHE1_STAA1 - Na(+)/H(+) antiporter subunit E1 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=mnhE1 PE=3 S... gi\|269202563\|ref... - putative monovalent cation/H+ antiporter subunit E [Staphylococcus aureus subsp. aureus ED98] MNHE1_STAA2 - Na(+)/H(+) antiporter subunit E1 OS=Staphylococcus aureus (strain JH1) GN=mnhE1 PE=3 SV=1 MNHE1_STAA9 - Na(+)/H(+) antiporter subunit E1 OS=Staphylococcus aureus (strain JH9) GN=mnhE1 PE=3 SV=1 MNHE1_STAAC - Na(+)/H(+) antiporter subunit E1 OS=Staphylococcus aureus (strain COL) GN=mnhE1 PE=3 SV=1 MNHE1_STAAM - Na(+)/H(+) antiporter subunit E1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=mnhE1 PE=3 ... MNHE1_STAAN - Na(+)/H(+) antiporter subunit E1 OS=Staphylococcus aureus (strain N315) GN=mnhE1 PE=1 SV=1 gi\|87126493\|gb\|A... - Na(+)/H(+) antiporter subunit E [Staphylococcus aureus subsp. aureus USA300], Na(+)/H(+) antiporter ... MNHE1_STAAU - Na(+)/H(+) antiporter subunit E1 OS=Staphylococcus aureus GN=mnhE1 PE=1 SV=1 MNHE1_STAA8 - Na(+)/H(+) antiporter subunit E1 OS=Staphylococcus aureus (strain NCTC 8325) GN=mnhE1 PE=3 SV=1 MNHE1_STAA3 - Na(+)/H(+) antiporter subunit E1 OS=Staphylococcus aureus (strain USA300) GN=mnhE1 PE=3 SV=1	156.0	[0..1]	[156..1]
gi\|91711226, gi\|... - gi\|91772211\|ref\|YP_564903.1\| putative monovalent cation/H+ antiporter subunit E [Methanococcoides bu...	155.0	[0..1]	[157..1]
MNHE1_STAS1 - Na(+)/H(+) antiporter subunit E1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 1...	155.0	[0..1]	[156..1]

Back

Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFQLILNII LACLWMFLES SFSFATFIIG FIIGIFLLFF MRRFLGSRFY LFRLFALVKL  60
   61 VFRFLHDLIV STVHVSRIVL KKDMNIRPGI FRYDTTLETD WEVTMLALLI TLTPGTLSID 120
  121 ISDDYKAIYV HSLHVPNIEE EIATIRKSYE GAIMEVFHG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	7.638272
Match:	PF01899.7
Description:	No description for PF01899.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits