YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|121491617, gi...
Organism:	Mycobacterium bovis BCG str. Pasteur 1173P2
Length:	352 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|121491617, gi....

Description	E-value	Query Range	Subject Range
gi\|30180660, gi\|... - gi\|30249341\|ref\|NP_841411.1\| Appr-1-p processing enzyme [Nitrosomonas europaea ATCC 19718], gi\|30180...	374.0	[0..1]	[348..1]
gi\|35213942, gi\|... - gi\|37522940\|ref\|NP_926317.1\| hypothetical protein glr3371 [Gloeobacter violaceus PCC 7421], gi\|35213...	373.0	[0..1]	[348..1]
SO1468 - conserved hypothetical protein gi\|24373042, gi\|... - gi\|24373042\|ref\|NP_717084.1\| hypothetical protein SO_1468 [Shewanella oneidensis MR-1], gi\|24347215\|...	362.0	[0..1]	[349..1]
gi\|38423800, gi\|... - gi\|38505776\|ref\|NP_942395.1\| hypothetical protein sll8001 [Synechocystis sp. PCC 6803], gi\|38423800\|...	361.0	[0..1]	[348..1]
gi\|77815946, gi\|... - gi\|77815946\|ref\|ZP_00815160.1\| Appr-1-p processing [Shewanella putrefaciens CN-32], gi\|77809098\|gb\|E...	332.0	[0..1]	[349..1]
gi\|111282675, gi... - gi\|120608869\|ref\|YP_968547.1\| appr-1-p processing domain-containing protein [Acidovorax avenae subsp...	330.0	[0..1]	[348..1]
gi\|148654474, gi... - gi\|148654474\|ref\|YP_001274679.1\| appr-1-p processing domain-containing protein [Roseiflexus sp. RS-1...	317.0	[0..1]	[349..1]
gi\|26991805, gi\|... - gi\|26991805\|ref\|NP_747230.1\| hypothetical protein PP_5129 [Pseudomonas putida KT2440], gi\|24986917\|g...	304.0	[0..1]	[350..1]
gi\|115367438, gi... - gi\|115375571\|ref\|ZP_01462829.1\| appr-1-p processing protein [Stigmatella aurantiaca DW4/3-1], gi\|115...	294.0	[0..6]	[348..7]
gi\|85372713 - gi\|85372713\|gb\|ABC70162.1\| Appr-1-p processing enzyme family protein [Laribacter hongkongensis]	290.0	[0..2]	[348..4]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITYGSGDLL RADTEALVNT VNCVGVMGKG IALQFKRRYP EMFTAYEKAC KRGEVTIGKM  60
   61 FVVDTGQLDG PKHIINFPTK KHWRAPSKLA YIDAGLIDLI RVIRELNIAS VAVPPLGVGN 120
  121 GGLDWEDVEQ RLVSAFQQLP DVDAVIYPPS GGSRAIEGVE GLRMTWGRAV ILEAMRRYLQ 180
  181 QRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.522879
Match:	1spvA
Description:	Crystal Structure of the Putative Phosphatase of Escherichia coli, Northeast Structural Genomoics Target ER58
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [184-352]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AMEPWEDPAG ISHLEIQKLM YFANEADPDL ALDFTPGRYG PYSERVRHLL QGMEGAFTVG  60
   61 LGDGTARVLA NQPISLTTKG TDAITDYLAT DAAADRVSAA VDTVLRVIEG FEGPYGVELL 120
  121 ASTHWVATRE GAKEPATAAA AVRKWTKRKG RIYSDDRIGV ALDRILMTA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits