YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|121586636, gi...
Organism:	Vibrio cholerae 2740-80
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|121586636, gi....

Description	E-value	Query Range	Subject Range
gi\|116184927, gi... - gi\|75855650\|ref\|ZP_00763295.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Vibrio sp. Ex25...	166.0	[0..1]	[146..1]
gi\|91190218, gi\|... - gi\|91224972\|ref\|ZP_01260231.1\| general secretion pathway protein G [Vibrio alginolyticus 12G01], gi\|...	166.0	[0..1]	[146..1]
gi\|28805118, gi\|... - gi\|28896910\|ref\|NP_796515.1\| general secretion pathway protein G [Vibrio parahaemolyticus RIMD 22106... gi\|28805118 - gi\|28805118\|dbj\|BAC58399.1\| general secretion pathway protein G [Vibrio parahaemolyticus RIMD 221063... gi\|149746473, gi... - gi\|153839996\|ref\|ZP_01992663.1\| general secretion pathway protein G [Vibrio parahaemolyticus AQ3810]...	165.0	[0..1]	[146..1]
gi\|116221301 - gi\|116221301\|ref\|ZP_01486711.1\| hypothetical protein VchoV5_02000650 [Vibrio cholerae V51] gi\|116217921 - gi\|116217921\|ref\|ZP_01483707.1\| hypothetical protein VchoR_02000325 [Vibrio cholerae RC385] gi\|75815849 - gi\|75815849\|ref\|ZP_00746339.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Vibrio cholerae...	164.0	[0..4]	[146..1]
gi\|54310531, gi\|... - gi\|54310531\|ref\|YP_131551.1\| putative type II secretory pathway, pseudopilin EpsG [Photobacterium pr...	161.0	[0..4]	[145..13]
gi\|37197140, gi\|... - gi\|37678401\|ref\|NP_933010.1\| type II secretory pathway, pseudopilin EpsG [Vibrio vulnificus YJ016], ...	160.0	[0..2]	[146..16]
gi\|27364322, gi\|... - gi\|27364322\|ref\|NP_759850.1\| Type II secretory pathway, pseudopilin EpsG [Vibrio vulnificus CMCP6], ...	160.0	[0..2]	[146..3]
gi\|90324230, gi\|... - gi\|90414688\|ref\|ZP_01222659.1\| putative type II secretory pathway, pseudopilin EpsG [Photobacterium ...	159.0	[0..4]	[145..2]
gi\|59481179, gi\|... - gi\|59713078\|ref\|YP_205854.1\| general secretion pathway protein G [Vibrio fischeri ES114], gi\|5948117...	158.0	[0..2]	[146..5]
gi\|82545404, gi\|... - gi\|82545404\|ref\|YP_409351.1\| putative type II secretion protein [Shigella boydii Sb227], gi\|81246815...	154.0	[0..2]	[146..6]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKMRKQTGF TLLEVMVVVV ILGILASFVV PNLLGNKEKA DQQKAVTDIV ALENALDMYK  60
   61 LDNSVYPTTD QGLEALVTKP TNPEPRNYRE GGYIKRLPKD PWGNDYQYLS PGDKGTIDVF 120
  121 TLGADGQEGG EGTGADIGNW NIQDFQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.39794
Match:	1t92A
Description:	Crystal structure of N-terminal truncated pseudopilin PulG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein transporter activity	8.7545256796234	bayes_pls_golite062009
transporter activity	2.74044424168852	bayes_pls_golite062009
substrate-specific transporter activity	2.55698329173896	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: