YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|127632096, gi...
Organism:	Listeria monocytogenes 10403S
Length:	251 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|127632096, gi....

Description	E-value	Query Range	Subject Range
gi\|25316695 - pir\|\|A83664 tRNA/rRNA methyltransferase BH0113 [imported] - Bacillus halodurans (strain C-125) gi\|15612676, gi\|... - gi\|15612676\|ref\|NP_240979.1\| tRNA/rRNA methyltransferase [Bacillus halodurans C-125], gi\|10172725\|db...	275.0	[0..6]	[251..2]
gi\|52001802, gi\|... - gi\|52783952\|ref\|YP_089781.1\| YacO [Bacillus licheniformis ATCC 14580], gi\|52346454\|gb\|AAU39088.1\| Ya...	267.0	[0..5]	[251..3]
gi\|47094582, gi\|... - gi\|47094582\|ref\|ZP_00232234.1\| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes s... gi\|254878817 - gi\|254878817\|ref\|ZP_05251527.1\| hypothetical protein LmonFSL_06470 [Listeria monocytogenes FSL J2-07... gi\|254853492 - gi\|254853492\|ref\|ZP_05242840.1\| hypothetical protein LmonoFSL_09425 [Listeria monocytogenes FSL R2-5... gi\|133728304, gi... - gi\|153165271\|ref\|ZP_01926222.1\| hypothetical protein LMHG_01120 [Listeria monocytogenes FSL N1-017],...	266.0	[0..1]	[251..1]
gi\|152973939, gi... - gi\|89203255\|ref\|ZP_01181941.1\| RNA methyltransferase TrmH, group 3 [Bacillus cereus subsp. cytotoxis...	264.0	[0..7]	[251..3]
gi\|46906474, gi\|... - gi\|46906474\|ref\|YP_012863.1\| RNA methyltransferase [Listeria monocytogenes str. 4b F2365], gi\|468797...	264.0	[0..1]	[251..1]
gi\|206732774, gi... - gi\|206972200\|ref\|ZP_03233147.1\| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH1134]... gi\|218160251, gi... - gi\|218232294\|ref\|YP_002364941.1\| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264]... gi\|30018362, gi\|... - gi\|30018362\|ref\|NP_829993.1\| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579], gi\|29893902\|gb...	263.0	[0..7]	[251..3]
gi\|25316722 - pir\|\|H97287 rRNA methylase, YACO B. subtilis ortholog [imported] - Clostridium acetobutylicum gi\|15026220, gi\|... - gi\|15896402\|ref\|NP_349751.1\| rRNA methylase [Clostridium acetobutylicum ATCC 824], gi\|15026220\|gb\|AA...	263.0	[0..1]	[246..1]
gi\|23097556, gi\|... - gi\|23097556\|ref\|NP_691022.1\| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831], gi\|22775...	263.0	[0..6]	[250..2]
gi\|56418622, gi\|... - gi\|56418622\|ref\|YP_145940.1\| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426], gi\|56378...	262.0	[0..8]	[251..2]
gi\|221312229 - gi\|221312229\|ref\|ZP_03594034.1\| hypothetical protein BsubsN3_00495 [Bacillus subtilis subsp. subtili... gi\|221317163 - gi\|221317163\|ref\|ZP_03598457.1\| hypothetical protein BsubsJ_00500 [Bacillus subtilis subsp. subtilis... gi\|221321426 - gi\|221321426\|ref\|ZP_03602720.1\| hypothetical protein BsubsS_00500 [Bacillus subtilis subsp. subtilis... YACO_BACSU - Putative TrmH family tRNA/rRNA methyltransferase YacO OS=Bacillus subtilis GN=yacO PE=3 SV=2 YACO_BACSU - Putative TrmH family tRNA/rRNA methyltransferase YacO OS=Bacillus subtilis (strain 168) GN=yacO PE=3...	262.0	[0..5]	[251..3]

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Predicted Domain #1

Region A:
Residues: [1-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQENEQEWI GGRNPVLEVL RSDRDIHKIY VQEGSQKGVL KQVLTLAKER KIQVQFVPKQ  60
   61 KIEKVVSGAH QGVAAQVAAY QYAELDDLFA AAEAKDEMPF FIILDELEDP HNLGSIMRTA 120
  121 DSVGAHGIII PKRRSVGLTQ TVAKASTGAM EYVPVVRVTN MVRTMEELQK RGLWIFGTDA 180
  181 KGSSDYRTMD VDMPLAIVIG SEGFGMSRLV REKCDFLVHL PMRGKVTSLN ASVAASLLLY 240
  241 EVYRKRFPLE K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.69897
Match:	1gz0A
Description:	RlmB, C-terminal domain; RlmB, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA methyltransferase activity	4.77771076540343	bayes_pls_golite062009
methyltransferase activity	4.0901595540349	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.01958090893547	bayes_pls_golite062009
rRNA methyltransferase activity	3.659149846946	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	2.59156540645412	bayes_pls_golite062009
tRNA methyltransferase activity	2.52700462137917	bayes_pls_golite062009
tRNA (guanine) methyltransferase activity	2.29844424181442	bayes_pls_golite062009
tRNA (guanine-N1-)-methyltransferase activity	2.0947794364355	bayes_pls_golite062009
transferase activity	1.84002196534744	bayes_pls_golite062009
RNA binding	1.73436583770023	bayes_pls_golite062009
nucleic acid binding	0.77674198136522	bayes_pls_golite062009
catalytic activity	0.634442580451797	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	0.47764353619615	bayes_pls_golite062009
binding	0.409411353978401	bayes_pls_golite062009
N-methyltransferase activity	0.0655574594365502	bayes_pls_golite062009
structural constituent of ribosome	0.0643795631250501	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: