YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|124527998, gi...
Organism:	Escherichia coli B
Length:	386 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124527998, gi....

Description	E-value	Query Range	Subject Range
gi\|193071694, gi... - gi\|75214711\|ref\|ZP_00713219.1\| COG0077: Prephenate dehydratase [Escherichia coli E110019], gi\|193071... gi\|75227670, gi\|... - gi\|75227670\|ref\|ZP_00714411.1\| COG0077: Prephenate dehydratase [Escherichia coli B7A], gi\|191169056\|... gi\|218361946, gi... - gi\|218555178\|ref\|YP_002388091.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia ... gi\|75178210, gi\|... - gi\|75178210\|ref\|ZP_00698269.1\| COG0077: Prephenate dehydratase [Shigella boydii BS512], gi\|187730271... gi\|157158544, gi... - gi\|75187346\|ref\|ZP_00700613.1\| COG0077: Prephenate dehydratase [Escherichia coli E24377A], gi\|157158... gi\|82545055, gi\|... - gi\|82545055\|ref\|YP_409002.1\| bifunctional chorismate mutase/prephenate dehydratase [Shigella boydii ... gi\|218696223, gi... - gi\|218696223\|ref\|YP_002403890.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia ...	400.0	[0..1]	[386..1]
PHEA_ENTAG - P-protein OS=Enterobacter agglomerans GN=pheA PE=3 SV=1	400.0	[0..1]	[385..1]
gi\|75258018, gi\|... - gi\|75258018\|ref\|ZP_00729492.1\| COG0077: Prephenate dehydratase [Escherichia coli E22], gi\|193064083\|... gi\|75208567, gi\|... - gi\|75208567\|ref\|ZP_00708880.1\| COG0077: Prephenate dehydratase [Escherichia coli B171], gi\|194430173...	400.0	[0..1]	[386..1]
gi\|74313183, gi\|... - gi\|74313183\|ref\|YP_311602.1\| bifunctional chorismate mutase/prephenate dehydratase [Shigella sonnei ...	400.0	[0..1]	[386..1]
gi\|25292745 - gi\|25292745\|pir\|\|B85906 chorismate mutase-P and prephenate dehydratase [imported] - Escherichia coli... gi\|12517021, gi\|... - gi\|15803121\|ref\|NP_289152.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia coli...	399.0	[0..1]	[386..1]
gi\|190905154, gi... - gi\|75236021\|ref\|ZP_00720155.1\| COG0077: Prephenate dehydratase [Escherichia coli F11], gi\|191174581\|... gi\|218559519, gi... - gi\|218559519\|ref\|YP_002392432.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia ... gi\|226899853, gi... - gi\|237706813\|ref\|ZP_04537294.1\| chorismate mutase P/prephenate dehydratase [Escherichia sp. 3_2_53FA... gi\|91211933, gi\|... - gi\|91211933\|ref\|YP_541919.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia coli... gi\|227888165, gi... - gi\|227888165\|ref\|ZP_04005970.1\| chorismate mutase [Escherichia coli 83972], gi\|227834805\|gb\|EEJ45271... gi\|110344352, gi... - gi\|110642760\|ref\|YP_670490.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia col... gi\|26248962, gi\|... - gi\|26248962\|ref\|NP_755002.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia coli... gi\|117624820, gi... - gi\|117624820\|ref\|YP_853733.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia col...	399.0	[0..1]	[386..1]
gi\|238721179, gi... - gi\|77972191\|ref\|ZP_00827765.1\| COG0077: Prephenate dehydratase [Yersinia frederiksenii ATCC 33641], ...	398.0	[0..1]	[386..1]
gi\|188494486, gi... - gi\|75513205\|ref\|ZP_00735647.1\| COG0077: Prephenate dehydratase [Escherichia coli 53638], gi\|18849448...	398.0	[0..1]	[386..1]
gi\|49612798, gi\|... - gi\|50122272\|ref\|YP_051439.1\| bifunctional chorismate mutase/prephenate dehydratase [Pectobacterium a...	396.0	[0..1]	[384..1]
gi\|81242100, gi\|... - gi\|82777952\|ref\|YP_404301.1\| bifunctional chorismate mutase/prephenate dehydratase [Shigella dysente...	394.0	[0..1]	[386..1]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSENPLLAL REKISALDEK LLALLAERRE LAVEVGKAKL LSHRPVRDID RERDLLERLI  60
   61 TLGKAHHLDA HYITRLFQLI IEDSVLTQQA LLQQHLNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.522879
Match:	1ecmA
Description:	Chorismate mutase domain of P-protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
chorismate mutase activity	3.78733095924257	bayes_pls_golite062009
catalytic activity	1.09506175640279	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [99-386]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INPHSARIAF LGPKGSYSHL AARQYAARHF EQFIESGCAK FADIFNQVET GQADYAVVPI  60
   61 ENTSSGAIND VYDLLQHTSL SIVGEMTLTI DHCLLVSGTT DLSTINTVYS HPQPFQQCSK 120
  121 FLNRYPHWKI EYTESTSAAM EKVAQAKSPH VAALGSEAGG TLYGLQVLER IEANQRQNFT 180
  181 RFVVLARKAI NVSDQVPAKT TLLMATGQQA GALVEALLVL RNHNLIMTRL ESRPIHGNPW 240
  241 EEMFYLDIQA NLESAEMQKA LKELGEITRS MKVLGCYPSE NVVPVDPT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.39794
Match:	2qmxA
Description:	No description for 2qmxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: