YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153185587, gi...
Organism:	Listeria monocytogenes J0161
Length:	695 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153185587, gi....

Description	E-value	Query Range	Subject Range
EFG_LISIN - Elongation factor G OS=Listeria innocua GN=fusA PE=3 SV=1 EFG_LISIN - Elongation factor G OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=fusA PE=3 SV=1	663.0	[0..1]	[695..1]
EFG_BACLD - Elongation factor G OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / ...	655.0	[0..1]	[691..1]
EFG_MOOTA - Elongation factor G OS=Moorella thermoacetica (strain ATCC 39073) GN=fusA PE=3 SV=1	653.0	[0..1]	[690..1]
EFG_CARHZ - Elongation factor G OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) G...	652.0	[0..1]	[691..1]
EFG_GEOKA - Elongation factor G OS=Geobacillus kaustophilus GN=fusA PE=3 SV=1 EFG_GEOKA - Elongation factor G OS=Geobacillus kaustophilus (strain HTA426) GN=fusA PE=3 SV=1	652.0	[0..1]	[691..1]
gi\|89084974, gi\|... - gi\|89100353\|ref\|ZP_01173218.1\| elongation factor EF-2 [Bacillus sp. NRRL B-14911], gi\|89084974\|gb\|EA...	651.0	[0..1]	[691..1]
EFG_BACHD - Elongation factor G OS=Bacillus halodurans GN=fusA PE=3 SV=2 EFG_BACHD - Elongation factor G OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 /...	650.0	[0..1]	[691..1]
gi\|10279668 - gi\|10279668\|emb\|CAC09927.1\| translation elongation factor G, EF-G [Geobacillus stearothermophilus]	648.0	[0..1]	[691..1]
gi\|16077180, gi\|... - gi\|2632379\|emb\|CAB11888.1\| elongation factor G [Bacillus subtilis subsp. subtilis str. 168], gi\|1607... EFG_BACSU - Elongation factor G OS=Bacillus subtilis GN=fusA PE=1 SV=2	648.0	[0..1]	[691..1]
EFG_BACCZ - Elongation factor G OS=Bacillus cereus (strain ZK / E33L) GN=fusA PE=3 SV=1	648.0	[0..1]	[691..1]

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Predicted Domain #1

Region A:
Residues: [1-695]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAREFSLEKT RNIGIMAHID AGKTTTTERI LFYTGRIHKI GETHEGASQM DWMEQEQERG  60
   61 ITITSAATTA QWKGYRVNII DTPGHVDFTV EVERSLRVLD GAVAVLDAQS GVEPQTETVW 120
  121 RQATTYGVPR VVFVNKMDKI GADFLYSVGT LHERLAANAH PIQLPIGAED TFEGIIDLIE 180
  181 MNALYYEDDL GNDPHIKEIP ADLKDLADEY RGKLVEAVAE LDEELMMKYL EGEEITKEEL 240
  241 KAGIRKGTLN VEFYPVVCGT AFKNKGVQPM LDAVLDYLPA PTDVPAINGV LPDGEEAARH 300
  301 ADDSEPFSSL AFKVMTDPYV GRLTFFRVYS GTLNSGSYVQ NSTKGKRERV GRILQMHANH 360
  361 REEISIVYAG DIAAAVGLKD TTTGDTLCDE KEQIILESME FPEPVIQVAI EPKSKADQDK 420
  421 MGQALAKLAE EDPTFRAETD QETGQTLISG MGELHLDILV DRMRREFRVE ANVGDPQVSY 480
  481 RETFRKSAQV EGKFVRQSGG RGQYGHVWIE FGPNEEGKGF EFENAIVGGV VPREYIPAVQ 540
  541 AGLEGALDNG VLAGYPLIDI KAKLYDGSYH DVDSNEMAFK VAASMALRNA AKKCDPVILE 600
  601 PMMAVEVVIP EEYLGDIMGN ITSRRGRVDG MEARGNAQVV RAFVPLANMF GYATHLRSGT 660
  661 QGRGVYTMQF DHYEEVPKSI AEEIIKANGG NNKED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	177.0
Match:	1darA
Description:	ELONGATION FACTOR G IN COMPLEX WITH GDP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits