YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153179045, gi...
Organism:	Listeria monocytogenes F6900
Length:	653 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153179045, gi....

Description	E-value	Query Range	Subject Range
gi\|16799998 - gi\|16799998\|ref\|NP_470266.1\| hypothetical protein lin0927 [Listeria innocua Clip11262] gi\|25307041, gi\|... - pir\|\|AG1548 hypothetical transmembrane protein lin0927 [imported] - Listeria innocua (strain Clip112...	462.0	[0..1]	[653..1]
gi\|228844183, gi... - gi\|228915536\|ref\|ZP_04079125.1\| Processed glycerol phosphate lipoteichoic acid synthase 2 [Bacillus ... gi\|65320220 - gi\|65320220\|ref\|ZP_00393179.1\| COG1368: Phosphoglycerol transferase and related proteins, alkaline p... gi\|228946549, gi... - gi\|228946549\|ref\|ZP_04108864.1\| Processed glycerol phosphate lipoteichoic acid synthase 2 [Bacillus ... gi\|228831679, gi... - gi\|228927989\|ref\|ZP_04091034.1\| Processed glycerol phosphate lipoteichoic acid synthase 2 [Bacillus ... gi\|229122485, gi... - gi\|229122485\|ref\|ZP_04251698.1\| Processed glycerol phosphate lipoteichoic acid synthase 2 [Bacillus ... gi\|229091943, gi... - gi\|229091943\|ref\|ZP_04223131.1\| Processed glycerol phosphate lipoteichoic acid synthase 2 [Bacillus ...	434.0	[0..1]	[653..8]
gi\|221240495, gi... - gi\|222096437\|ref\|YP_002530494.1\| sulfatase [Bacillus cereus Q1], gi\|221240495\|gb\|ACM13205.1\| sulfata... gi\|42782043, gi\|... - gi\|42782043\|ref\|NP_979290.1\| sulfatase [Bacillus cereus ATCC 10987], gi\|42737967\|gb\|AAS41898.1\| sulf...	433.0	[0..1]	[653..1]
gi\|47568753, gi\|... - gi\|47568753\|ref\|ZP_00239448.1\| phosphoglycerol transferase [Bacillus cereus G9241], gi\|47554533\|gb\|E...	432.0	[0..1]	[653..1]
gi\|30257539, gi\|... - gi\|30262906\|ref\|NP_845283.1\| sulfatase [Bacillus anthracis str. Ames], gi\|30257539\|gb\|AAP26769.1\| su...	432.0	[0..1]	[653..1]
gi\|227814249, gi... - gi\|227814249\|ref\|YP_002814258.1\| sulfatase [Bacillus anthracis str. CDC 684], gi\|227004603\|gb\|ACP143... gi\|49185743, gi\|... - gi\|49185743\|ref\|YP_028995.1\| sulfatase [Bacillus anthracis str. Sterne], gi\|49179670\|gb\|AAT55046.1\| ... gi\|47528239, gi\|... - gi\|47528239\|ref\|YP_019588.1\| sulfatase [Bacillus anthracis str. 'Ames Ancestor'], gi\|47503387\|gb\|AAT... gi\|21400829 - ref\|NP_656814.1\| Sulfatase, Sulfatase [Bacillus anthracis str. A2012] gi\|254752274 - gi\|254752274\|ref\|ZP_05204311.1\| sulfatase [Bacillus anthracis str. Vollum] gi\|254737959 - gi\|254737959\|ref\|ZP_05195662.1\| sulfatase [Bacillus anthracis str. Western North America USA6153] gi\|254685503 - gi\|254685503\|ref\|ZP_05149363.1\| sulfatase [Bacillus anthracis str. CNEVA-9066] gi\|229264740, gi... - gi\|229600332\|ref\|YP_002867196.1\| arylsulfatase [Bacillus anthracis str. A0248], gi\|229264740\|gb\|ACQ4... gi\|254760791 - gi\|254760791\|ref\|ZP_05212815.1\| sulfatase [Bacillus anthracis str. Australia 94] gi\|218904062, gi... - gi\|218904062\|ref\|YP_002451896.1\| sulfatase [Bacillus cereus AH820], gi\|218539206\|gb\|ACK91604.1\| sulf... gi\|196042223, gi... - gi\|196042223\|ref\|ZP_03109504.1\| sulfatase [Bacillus cereus NVH0597-99], gi\|196026941\|gb\|EDX65567.1\| ... gi\|196032397, gi... - gi\|196032397\|ref\|ZP_03099811.1\| sulfatase [Bacillus cereus W], gi\|195995148\|gb\|EDX59102.1\| sulfatase... gi\|190564099, gi... - gi\|190564782\|ref\|ZP_03017703.1\| sulfatase [Bacillus anthracis Tsiankovskii-I], gi\|190564099\|gb\|EDV18... gi\|172084705, gi... - gi\|177649631\|ref\|ZP_02932633.1\| sulfatase [Bacillus anthracis str. A0174], gi\|172084705\|gb\|EDT69763.... gi\|170130279, gi... - gi\|170704478\|ref\|ZP_02894944.1\| sulfatase [Bacillus anthracis str. A0389], gi\|170130279\|gb\|EDS99140.... gi\|170685466, gi... - gi\|170685466\|ref\|ZP_02876690.1\| sulfatase [Bacillus anthracis str. A0465], gi\|170670826\|gb\|EDT21565.... gi\|167514428, gi... - gi\|167637879\|ref\|ZP_02396158.1\| sulfatase [Bacillus anthracis str. A0193], gi\|167514428\|gb\|EDR89795.... gi\|164715830, gi... - gi\|165869104\|ref\|ZP_02213764.1\| sulfatase [Bacillus anthracis str. A0488], gi\|164715830\|gb\|EDR21347....	432.0	[0..1]	[653..1]
gi\|49330613, gi\|... - gi\|49479057\|ref\|YP_037012.1\| phosphoglycerol transferase [Bacillus thuringiensis serovar konkukian s...	431.0	[0..1]	[653..1]
gi\|51976045, gi\|... - gi\|52142576\|ref\|YP_084253.1\| phosphoglycerol transferase [Bacillus cereus E33L], gi\|51976045\|gb\|AAU1...	430.0	[0..1]	[653..1]
gi\|7445526, gi\|2... - pir\|\|D69815 conserved hypothetical protein yfnI - Bacillus subtilis, gi\|2116767\|dbj\|BAA20118.1\| Yfn... gi\|221317812 - gi\|221317812\|ref\|ZP_03599106.1\| hypothetical protein BsubsJ_03983 [Bacillus subtilis subsp. subtilis... gi\|221312888 - gi\|221312888\|ref\|ZP_03594693.1\| hypothetical protein BsubsN3_04029 [Bacillus subtilis subsp. subtili... gi\|221322086 - gi\|221322086\|ref\|ZP_03603380.1\| hypothetical protein BsubsS_04074 [Bacillus subtilis subsp. subtilis... gi\|221308563 - gi\|221308563\|ref\|ZP_03590410.1\| hypothetical protein Bsubs1_04073 [Bacillus subtilis subsp. subtilis...	419.0	[0..2]	[649..9]
LTAS1_BACSU - Lipoteichoic acid synthase 1 OS=Bacillus subtilis GN=ltaS1 PE=1 SV=1 LTAS1_BACSU - Lipoteichoic acid synthase 1 OS=Bacillus subtilis (strain 168) GN=ltaS1 PE=1 SV=1	414.0	[0..8]	[649..1]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDWKIKIQT FLSKNYGFFV LAVILYWLKT YIAYQLEFKL GIENLMQQIL LFINPLSGAI  60
   61 FFMGLALFAK GRRSFIWIIV IDFLMSFILY ANIVYYRFFS DFITLPNLNA KQMQNMGDMG 120
  121 SSITALLSWH DIIYFADIII LIALLAFRFV KPNKTARIRA RKVVGVLTLG IAMFFGNLGL 180
  181 AEIDRPQLLT RTFDRNYIVK YLGMTNYQIY DAVKSTESST QRALADSSDV TEVLNYTKSK 240
  241 YAAPNPEYFG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [251-653]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAKGKNVIYI HLESFQQFLV NYKLNGEEVT PFINSFFKDQ NTLSFTNFFH QTGQGKTADS  60
   61 EMLLENSLYG LPQGSAFTTK GQNTYESASA ILGQQGYTSA VFHGNYKSFW NRDEIYKQFG 120
  121 YDNFFDASYY DMNEADVSNY GLKDKPFFKE SEEYLSSLQQ PFYTKFITLT NHFPYPIDEK 180
  181 DASIAPATTG DSSVDTYFQT ARYLDESVKS FVDYLKKSGL YDNSVIIMYG DHYGISDNHE 240
  241 EAMTKILGKD YNTFENAQAQ RVPLMIHVPG VQGGVQEQYG GQVDLLPTLL HLLGVDNKEY 300
  301 LQFGTDLLSK DHKQLVPFRN GDYITPTYSM IGGNMYNQQT GEPIATETKE MKETKEKVAK 360
  361 ELELSDSVLQ GDLLRFYAPD GFKKVDPSKY NYNKKKSTDS SDK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	1e33P
Description:	Arylsulfatase A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.68372961800329	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	1.55034747447774	bayes_pls_golite062009
hydrolase activity	1.50712564257206	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: